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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058298 through 18771 annotations produced 1 hits



(CG40298):

Annotation Number : CG40298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058298
Gbrowse : chr3L:23719966-23721046 (+) // 100.0 //
Probeset : 1638687_at
Accessions : protein= NP_001036631;, nucleotide= NM_001043166;
FlyMine data for FBgn0058298.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.30Down
Head85 ± 94 of 4 5.80Up
Eye3 ± 11 of 4 0.25Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.41Down
Crop198 ± 64 of 413.40Up
Midgut5 ± 11 of 4 0.40Down
Tubule3 ± 00 of 4 0.20Down
Hindgut46 ± 44 of 4 3.10Up
Heart189 ± 154 of 412.79Up
Fat body11 ± 83 of 4 0.76None
Ovary6 ± 04 of 4 0.40Down
Testis4 ± 03 of 4 0.30Down
Male accessory glands31 ± 24 of 4 2.10Up
Virgin spermatheca6 ± 13 of 4 0.44Down
Mated spermatheca7 ± 02 of 4 0.51Down
Adult carcass38 ± 34 of 4 2.60Up
Larval CNS3 ± 11 of 4 0.26Down
Larval Salivary gland3 ± 11 of 4 0.24Down
Larval midgut7 ± 12 of 4 0.52None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut37 ± 34 of 4 2.50Up
Larval fat body3 ± 10 of 4 0.30Down
Larval trachea9 ± 74 of 4 0.63None
Larval carcass186 ± 214 of 412.56Up
S2 cells (growing)4 ± 02 of 4 0.32Down
Whole fly14 ± 24 of 4

Looking for FBgn0058298. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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