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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058378 through 18771 annotations produced 1 hits



(CG40378):

Annotation Number : CG40378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058378
Gbrowse : chrU:72263-72945 (+) // 100.0 //
Probeset : 1637884_at
Accessions : protein= NP_001015335;, nucleotide= NM_001015335;
FlyMine data for FBgn0058378.
VDRC has 1 RNAi stocks for FBgn0058378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 ± 14 of 414.40Up
Head16 ± 33 of 4 4.10Up
Eye0 ± 00 of 4 0.24None
Thoracicoabdominal ganglion36 ± 44 of 4 9.30Up
Salivary gland7 ± 20 of 4 1.87None
Crop2 ± 10 of 4 0.70None
Midgut1 ± 00 of 4 0.30None
Tubule0 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.17None
Fat body2 ± 31 of 4 0.74None
Ovary6 ± 11 of 4 1.70None
Testis16 ± 14 of 4 4.20Up
Male accessory glands5 ± 00 of 4 1.50None
Virgin spermatheca0 ± 00 of 4 0.11None
Mated spermatheca0 ± 00 of 4 0.13None
Adult carcass3 ± 20 of 4 1.00None
Larval CNS22 ± 44 of 4 5.67Up
Larval Salivary gland0 ± 00 of 4 0.20None
Larval midgut1 ± 00 of 4 0.27None
Larval tubule1 ± 10 of 4 0.40None
Larval hindgut0 ± 00 of 4 0.06None
Larval fat body2 ± 10 of 4 0.70None
Larval trachea0 ± 00 of 4 0.10None
Larval carcass0 ± 00 of 4 0.10None
S2 cells (growing)0 ± 00 of 4 0.18None
Whole fly3 ± 21 of 4

Looking for FBgn0058378. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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