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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0058470 through 18771 annotations produced 1 hits



(CG40470):

Annotation Number : CG40470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058470
Gbrowse : chr3L:23927630-23979490 (-) // 100.0 //
Probeset : 1635213_at
Accessions : protein= NP_001036635;, nucleotide= NM_001043170;
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // in
FlyMine data for FBgn0058470.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 ± 74 of 415.30Up
Head60 ± 134 of 4 5.40Up
Eye3 ± 10 of 4 0.27Down
Thoracicoabdominal ganglion92 ± 164 of 4 8.30Up
Salivary gland12 ± 40 of 4 1.08None
Crop1 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.30Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.17Down
Fat body4 ± 20 of 4 0.41Down
Ovary4 ± 10 of 4 0.40Down
Testis86 ± 24 of 4 7.70Up
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca1 ± 00 of 4 0.11Down
Mated spermatheca4 ± 10 of 4 0.39Down
Adult carcass7 ± 20 of 4 0.60None
Larval CNS48 ± 34 of 4 4.36Up
Larval Salivary gland4 ± 10 of 4 0.35Down
Larval midgut2 ± 10 of 4 0.25Down
Larval tubule2 ± 10 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.21Down
Larval fat body16 ± 61 of 4 1.50None
Larval trachea0 ± 00 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.18Down
S2 cells (growing)1 ± 00 of 4 0.14Down
Whole fly11 ± 23 of 4

Looking for FBgn0058470. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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