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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0060296 through 18771 annotations produced 1 hits



painless (pain):

Annotation Number : CG15860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0060296
Gbrowse : chr2R:20809027-20812166 (-) // 99.18 //
Probeset : 1628875_at
Accessions : protein= NP_611979;, nucleotide= NM_138135;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author s
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005216 // ion channel activity // traceable
FlyMine data for FBgn0060296.
TRiP has 2 RNAi stocks for FBgn0060296 available for purchase.
VDRC has 2 RNAi stocks for FBgn0060296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 1.00None
Head49 04 of 4 2.20Up
Eye62 34 of 4 2.75Up
Thoracicoabdominal ganglion24 34 of 4 1.10None
Salivary gland6 21 of 4 0.29Down
Crop221 64 of 4 9.80Up
Midgut31 24 of 4 1.40Up
Tubule16 22 of 4 0.70Down
Hindgut206 34 of 4 9.10Up
Heart7 21 of 4 0.32Down
Fat body7 61 of 4 0.33Down
Ovary15 14 of 4 0.70Down
Testis15 14 of 4 0.70Down
Male accessory glands18 23 of 4 0.80None
Virgin spermatheca6 10 of 4 0.27Down
Mated spermatheca15 10 of 4 0.66Down
Adult carcass41 44 of 4 1.80Up
Larval CNS43 34 of 4 1.91Up
Larval Salivary gland5 20 of 4 0.23Down
Larval midgut27 14 of 4 1.23None
Larval tubule11 12 of 4 0.50Down
Larval hindgut152 104 of 4 6.74Up
Larval fat body6 10 of 4 0.30Down
Larval trachea21 14 of 4 0.96None
Larval carcass54 104 of 4 2.40None
S2 cells (growing)37 14 of 4 1.66Up
Whole fly22 14 of 4

Looking for FBgn0060296. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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