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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0061196 through 18771 annotations produced 1 hits

Syntaxin Interacting Protein 3 (SIP3):

Annotation Number : CG15468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061196
Gbrowse : chrX:4853958-4855033 (-) // 100.0 //
Probeset : 1632999_at
Accessions : protein= NP_572200;, nucleotide= NM_131972;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0061196.
BioGrid reports that CG15468 interacts with CG4898 CG6856 CG7371 CG32584 CG6251 CG9426 .
VDRC has 1 RNAi stocks for FBgn0061196 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 20 of 4 0.10Down
Head7 10 of 4 0.10Down
Eye4 10 of 4 0.08Down
Thoracicoabdominal ganglion5 20 of 4 0.10Down
Salivary gland41 73 of 4 0.71None
Crop14 21 of 4 0.20Down
Midgut6 10 of 4 0.10Down
Tubule10 10 of 4 0.20Down
Hindgut13 11 of 4 0.20Down
Heart5 10 of 4 0.09Down
Fat body29 73 of 4 0.49Down
Ovary11 01 of 4 0.20Down
Testis563 194 of 4 9.60Up
Male accessory glands53 34 of 4 0.90None
Virgin spermatheca33 34 of 4 0.57Down
Mated spermatheca33 83 of 4 0.57None
Adult carcass8 20 of 4 0.10Down
Larval CNS15 33 of 4 0.26Down
Larval Salivary gland14 33 of 4 0.25Down
Larval midgut8 21 of 4 0.14Down
Larval tubule12 21 of 4 0.20Down
Larval hindgut7 10 of 4 0.13Down
Larval fat body77 393 of 4 1.30None
Larval trachea9 42 of 4 0.16Down
Larval carcass13 20 of 4 0.23Down
S2 cells (growing)14 03 of 4 0.25Down
Whole fly58 34 of 4

Looking for FBgn0061196. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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