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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0061362 through 18771 annotations produced 1 hits



/// (CG33785 /// CG33786):

Annotation Number : CG33005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061361 /// FBgn0061362
Gbrowse : chr2R:16529965-16531285 (-) // 100.0 //
Probeset : 1623268_a_at
Accessions : protein= NP_001027443; /// NP_001027444;, nucleotide= NM_001032272; /// NM_001032273;
Pathway : 0005666 // DNA-directed RNA polymerase III complex // inferred from sequence or structural similarity
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0061361 /// FBgn0061362.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 24 of 4 0.50Down
Head55 54 of 4 0.60Down
Eye49 84 of 4 0.53Down
Thoracicoabdominal ganglion41 34 of 4 0.40Down
Salivary gland58 54 of 4 0.62Down
Crop62 44 of 4 0.70Down
Midgut79 94 of 4 0.80None
Tubule55 64 of 4 0.60Down
Hindgut59 44 of 4 0.60Down
Heart27 34 of 4 0.29Down
Fat body48 34 of 4 0.52Down
Ovary175 64 of 4 1.90Up
Testis35 14 of 4 0.40Down
Male accessory glands142 74 of 4 1.50Up
Virgin spermatheca37 24 of 4 0.40Down
Mated spermatheca54 84 of 4 0.59Down
Adult carcass52 24 of 4 0.60Down
Larval CNS96 74 of 4 1.03None
Larval Salivary gland59 14 of 4 0.64Down
Larval midgut44 34 of 4 0.47Down
Larval tubule49 44 of 4 0.50Down
Larval hindgut54 44 of 4 0.58Down
Larval fat body46 34 of 4 0.50Down
Larval trachea75 174 of 4 0.81None
Larval carcass83 134 of 4 0.89None
S2 cells (growing)273 64 of 4 2.93Up
Whole fly93 94 of 4

Looking for FBgn0061362. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime