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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0061469 through 18771 annotations produced 1 hits



Drosophila Angelman syndrome (Ube3a):

Annotation Number : CG6190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061469
Gbrowse : chr3L:11199518-11203680 (-) // 100.0 //
Probeset : 1632309_at
Accessions : protein= NP_648452;, nucleotide= NM_140195;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0061469.
Homophila reports that CG6190 is a close match (3e-16) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
TRiP has 1 RNAi stocks for FBgn0061469 available for purchase.
VDRC has 3 RNAi stocks for FBgn0061469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 24 of 4 0.90None
Head85 44 of 4 0.50Down
Eye145 64 of 4 0.92None
Thoracicoabdominal ganglion151 54 of 4 1.00None
Salivary gland127 114 of 4 0.80None
Crop88 34 of 4 0.60Down
Midgut76 84 of 4 0.50Down
Tubule115 94 of 4 0.70Down
Hindgut60 44 of 4 0.40Down
Heart122 44 of 4 0.77Down
Fat body115 94 of 4 0.73Down
Ovary244 64 of 4 1.50Up
Testis671 104 of 4 4.20Up
Male accessory glands148 64 of 4 0.90None
Virgin spermatheca144 54 of 4 0.92None
Mated spermatheca143 64 of 4 0.91None
Adult carcass85 44 of 4 0.50Down
Larval CNS188 84 of 4 1.19Up
Larval Salivary gland139 34 of 4 0.88Down
Larval midgut151 224 of 4 0.96None
Larval tubule234 24 of 4 1.50Up
Larval hindgut144 134 of 4 0.91None
Larval fat body167 114 of 4 1.10None
Larval trachea138 64 of 4 0.88Down
Larval carcass251 384 of 4 1.59None
S2 cells (growing)218 44 of 4 1.38Up
Whole fly158 14 of 4

Looking for FBgn0061469. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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