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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0061492 through 18771 annotations produced 1 hits



logjam (loj):

Annotation Number : CG10733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061492
Gbrowse : chr3L:6088092-6089615 (+) // 100.0 //
Probeset : 1633779_s_at
Accessions : protein= NP_648027; /// NP_729140; /// NP_729141;, nucleotide= NM_139770; /// NM_168154; /// NM_168155;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0061492.
BioGrid reports that CG10733 interacts with CG16972 CG9610 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 34 of 4 0.50Down
Head345 224 of 4 1.20None
Eye286 244 of 4 0.96None
Thoracicoabdominal ganglion138 94 of 4 0.50Down
Salivary gland470 174 of 4 1.58Up
Crop197 84 of 4 0.70Down
Midgut486 134 of 4 1.60Up
Tubule302 144 of 4 1.00None
Hindgut185 54 of 4 0.60Down
Heart379 34 of 4 1.27Up
Fat body762 894 of 4 2.55Up
Ovary337 154 of 4 1.10None
Testis89 34 of 4 0.30Down
Male accessory glands1781 484 of 4 6.00Up
Virgin spermatheca652 434 of 4 2.18Up
Mated spermatheca841 804 of 4 2.82Up
Adult carcass313 94 of 4 1.00None
Larval CNS282 224 of 4 0.95None
Larval Salivary gland979 244 of 4 3.28Up
Larval midgut266 44 of 4 0.89None
Larval tubule280 44 of 4 0.90None
Larval hindgut334 114 of 4 1.12None
Larval fat body1158 1244 of 4 3.90Up
Larval trachea1038 2064 of 4 3.48Up
Larval carcass745 394 of 4 2.49Up
S2 cells (growing)656 104 of 4 2.20Up
Whole fly298 184 of 4

Looking for FBgn0061492. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime