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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0062411 through 18771 annotations produced 1 hits



Copper transporter 1C (Ctr1C):

Annotation Number : CG15551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062411
Gbrowse : chr3R:26789010-26790042 (-) // 100.0 //
Probeset : 1634214_a_at
Accessions : protein= NP_651837; /// NP_788771;, nucleotide= NM_143580; /// NM_176594;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0005375 // copper ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005375
FlyMine data for FBgn0062411.
VDRC has 2 RNAi stocks for FBgn0062411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion3 11 of 4 0.30Down
Salivary gland2 00 of 4 0.15Down
Crop4 00 of 4 0.30Down
Midgut3 10 of 4 0.20Down
Tubule3 00 of 4 0.30Down
Hindgut3 10 of 4 0.20Down
Heart1 00 of 4 0.07Down
Fat body5 30 of 4 0.36Down
Ovary2 00 of 4 0.20Down
Testis208 94 of 415.10Up
Male accessory glands5 20 of 4 0.40Down
Virgin spermatheca3 10 of 4 0.23Down
Mated spermatheca3 10 of 4 0.22Down
Adult carcass7 20 of 4 0.50None
Larval CNS2 10 of 4 0.16Down
Larval Salivary gland2 00 of 4 0.16Down
Larval midgut2 10 of 4 0.16Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut2 10 of 4 0.18Down
Larval fat body38 203 of 4 2.80None
Larval trachea2 20 of 4 0.18Down
Larval carcass6 10 of 4 0.49Down
S2 cells (growing)3 00 of 4 0.25Down
Whole fly13 04 of 4

Looking for FBgn0062411. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime