FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0062411 through 18771 annotations produced 1 hits

Copper transporter 1C (Ctr1C):

Annotation Number : CG15551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062411
Gbrowse : chr3R:26789010-26790042 (-) // 100.0 //
Probeset : 1634214_a_at
Accessions : protein= NP_651837; /// NP_788771;, nucleotide= NM_143580; /// NM_176594;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0005375 // copper ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0005375
FlyMine data for FBgn0062411.
VDRC has 2 RNAi stocks for FBgn0062411 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.20	Down
Head	1 ± 0	0 of 4	0.10	Down
Eye	1 ± 0	0 of 4	0.08	Down
Thoracicoabdominal ganglion	3 ± 1	1 of 4	0.30	Down
Salivary gland	2 ± 0	0 of 4	0.15	Down
Crop	4 ± 0	0 of 4	0.30	Down
Midgut	3 ± 1	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.30	Down
Hindgut	3 ± 1	0 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.07	Down
Fat body	5 ± 3	0 of 4	0.36	Down
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	208 ± 9	4 of 4	15.10	Up
Male accessory glands	5 ± 2	0 of 4	0.40	Down
Virgin spermatheca	3 ± 1	0 of 4	0.23	Down
Mated spermatheca	3 ± 1	0 of 4	0.22	Down
Adult carcass	7 ± 2	0 of 4	0.50	None
Larval CNS	2 ± 1	0 of 4	0.16	Down
Larval Salivary gland	2 ± 0	0 of 4	0.16	Down
Larval midgut	2 ± 1	0 of 4	0.16	Down
Larval tubule	3 ± 1	0 of 4	0.30	Down
Larval hindgut	2 ± 1	0 of 4	0.18	Down
Larval fat body	38 ± 20	3 of 4	2.80	None
Larval trachea	2 ± 2	0 of 4	0.18	Down
Larval carcass	6 ± 1	0 of 4	0.49	Down
S2 cells (growing)	3 ± 0	0 of 4	0.25	Down
Whole fly	13 ± 0	4 of 4

Looking for FBgn0062411. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720