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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0062412 through 18771 annotations produced 1 hits



Copper transporter 1B (Ctr1B):

Annotation Number : CG7459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062412
Gbrowse : chr3R:4143339-4145285 (+) // 100.0 //
Probeset : 1626388_at
Accessions : protein= NP_649790;, nucleotide= NM_141533;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0005375 // copper ion transmembrane transporter activity // inferred from direct assay /// 0005375 // copper ion transme
FlyMine data for FBgn0062412.
VDRC has 2 RNAi stocks for FBgn0062412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.60Down
Head9 ± 04 of 4 1.00None
Eye9 ± 03 of 4 1.05None
Thoracicoabdominal ganglion7 ± 03 of 4 0.80None
Salivary gland14 ± 31 of 4 1.55None
Crop97 ± 74 of 410.80Up
Midgut10 ± 13 of 4 1.10None
Tubule17 ± 13 of 4 1.90Up
Hindgut13 ± 14 of 4 1.50Up
Heart5 ± 13 of 4 0.59None
Fat body13 ± 34 of 4 1.50None
Ovary3 ± 01 of 4 0.40Down
Testis4 ± 01 of 4 0.50Down
Male accessory glands21 ± 14 of 4 2.40Up
Virgin spermatheca13 ± 24 of 4 1.47None
Mated spermatheca9 ± 14 of 4 1.06None
Adult carcass12 ± 42 of 4 1.40None
Larval CNS4 ± 12 of 4 0.47Down
Larval Salivary gland8 ± 23 of 4 0.89None
Larval midgut11 ± 24 of 4 1.29None
Larval tubule9 ± 14 of 4 1.00None
Larval hindgut27 ± 14 of 4 3.00Up
Larval fat body40 ± 74 of 4 4.50Up
Larval trachea3 ± 10 of 4 0.38Down
Larval carcass7 ± 12 of 4 0.80None
S2 cells (growing)4 ± 03 of 4 0.47Down
Whole fly9 ± 14 of 4

Looking for FBgn0062412. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime