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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0062440 through 18771 annotations produced 1 hits



(CG17680):

Annotation Number : CG17680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062440
Gbrowse : chr2R:14034801-14035499 (-) // 100.0 //
Probeset : 1624683_at
Accessions : protein= NP_611294;, nucleotide= NM_137450;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
FlyMine data for FBgn0062440.
VDRC has 3 RNAi stocks for FBgn0062440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain805 ± 74 of 4 2.40Up
Head513 ± 224 of 4 1.50Up
Eye420 ± 254 of 4 1.26Up
Thoracicoabdominal ganglion1052 ± 134 of 4 3.10Up
Salivary gland671 ± 154 of 4 2.00Up
Crop630 ± 84 of 4 1.90Up
Midgut265 ± 64 of 4 0.80Down
Tubule272 ± 74 of 4 0.80Down
Hindgut459 ± 114 of 4 1.40Up
Heart403 ± 154 of 4 1.21Up
Fat body229 ± 184 of 4 0.68Down
Ovary518 ± 34 of 4 1.50Up
Testis42 ± 14 of 4 0.10Down
Male accessory glands600 ± 294 of 4 1.80Up
Virgin spermatheca364 ± 224 of 4 1.09None
Mated spermatheca418 ± 534 of 4 1.25None
Adult carcass302 ± 104 of 4 0.90None
Larval CNS456 ± 544 of 4 1.36Up
Larval Salivary gland502 ± 354 of 4 1.50Up
Larval midgut200 ± 54 of 4 0.60Down
Larval tubule429 ± 74 of 4 1.30Up
Larval hindgut540 ± 154 of 4 1.61Up
Larval fat body265 ± 274 of 4 0.80None
Larval trachea663 ± 364 of 4 1.98Up
Larval carcass902 ± 604 of 4 2.69Up
S2 cells (growing)487 ± 124 of 4 1.45Up
Whole fly335 ± 144 of 4

Looking for FBgn0062440. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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