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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0062449 through 18771 annotations produced 1 hits



(CG13197):

Annotation Number : CG13197
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062449
Gbrowse : chr2R:7578800-7582958 (+) // 100.0 //
Probeset : 1638898_at
Accessions : protein= NP_610696;, nucleotide= NM_136852;
Interpro : 0004725 // protein tyrosine phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding /
FlyMine data for FBgn0062449.
BioGrid reports that CG13197 interacts with CG17003 .
TRiP has 1 RNAi stocks for FBgn0062449 available for purchase.
VDRC has 2 RNAi stocks for FBgn0062449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 54 of 4 1.30Up
Head112 84 of 4 0.60Down
Eye161 34 of 4 0.90None
Thoracicoabdominal ganglion203 44 of 4 1.10None
Salivary gland104 74 of 4 0.58Down
Crop161 84 of 4 0.90None
Midgut72 34 of 4 0.40Down
Tubule45 24 of 4 0.30Down
Hindgut111 14 of 4 0.60Down
Heart112 24 of 4 0.63Down
Fat body97 114 of 4 0.55Down
Ovary352 94 of 4 2.00Up
Testis610 114 of 4 3.40Up
Male accessory glands79 84 of 4 0.40Down
Virgin spermatheca70 34 of 4 0.39Down
Mated spermatheca83 14 of 4 0.47Down
Adult carcass92 24 of 4 0.50Down
Larval CNS119 94 of 4 0.67Down
Larval Salivary gland95 74 of 4 0.53Down
Larval midgut58 14 of 4 0.33Down
Larval tubule66 14 of 4 0.40Down
Larval hindgut79 44 of 4 0.45Down
Larval fat body140 294 of 4 0.80None
Larval trachea105 44 of 4 0.59Down
Larval carcass77 54 of 4 0.44Down
S2 cells (growing)115 34 of 4 0.64Down
Whole fly178 94 of 4

Looking for FBgn0062449. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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