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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0062961 through 18771 annotations produced 1 hits



():

Annotation Number : RH09485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062961
Gbrowse : chr2R:14598895-14599457 (+) // 100.0 //
Probeset : 1630520_s_at
Accessions : protein= , nucleotide= NR_002547;
FlyMine data for FBgn0062961.
TRiP has 1 RNAi stocks for FBgn0062961 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 21 of 4 0.10Down
Head303 ± 324 of 4 6.90Up
Eye89 ± 184 of 4 2.01None
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.17Down
Crop4 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.00Down
Tubule2 ± 10 of 4 0.10Down
Hindgut13 ± 12 of 4 0.30Down
Heart111 ± 74 of 4 2.51Up
Fat body337 ± 674 of 4 7.64Up
Ovary2 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands175 ± 164 of 4 4.00Up
Virgin spermatheca237 ± 134 of 4 5.37Up
Mated spermatheca259 ± 44 of 4 5.86Up
Adult carcass146 ± 164 of 4 3.30Up
Larval CNS2 ± 21 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body462 ± 724 of 410.50Up
Larval trachea4 ± 30 of 4 0.11Down
Larval carcass3 ± 10 of 4 0.08Down
S2 cells (growing)3 ± 00 of 4 0.08Down
Whole fly44 ± 14 of 4

Looking for FBgn0062961. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime