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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063083 through 18771 annotations produced 1 hits



():

Annotation Number : LP12023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063083
Gbrowse : chr3L:7399422-7399719 (+) // 100.0 //
Probeset : 1630257_s_at
Accessions : protein= , nucleotide= NR_002480;
FlyMine data for FBgn0063083.
TRiP has 1 RNAi stocks for FBgn0063083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head3 10 of 4 0.40Down
Eye1 00 of 4 0.20Down
Thoracicoabdominal ganglion3 10 of 4 0.40Down
Salivary gland8 30 of 4 0.92None
Crop3 00 of 4 0.40Down
Midgut3 20 of 4 0.40None
Tubule3 00 of 4 0.30Down
Hindgut1 00 of 4 0.10Down
Heart2 00 of 4 0.32Down
Fat body3 20 of 4 0.39Down
Ovary3 00 of 4 0.40Down
Testis75 54 of 4 8.30Up
Male accessory glands5 10 of 4 0.60None
Virgin spermatheca5 10 of 4 0.65None
Mated spermatheca2 00 of 4 0.22Down
Adult carcass7 20 of 4 0.80None
Larval CNS2 10 of 4 0.28Down
Larval Salivary gland6 10 of 4 0.66None
Larval midgut1 00 of 4 0.16Down
Larval tubule3 10 of 4 0.40Down
Larval hindgut6 41 of 4 0.75None
Larval fat body4 20 of 4 0.50None
Larval trachea2 10 of 4 0.27Down
Larval carcass777 4064 of 485.67None
S2 cells (growing)1 00 of 4 0.19Down
Whole fly9 01 of 4

Looking for FBgn0063083. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime