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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063127 through 18771 annotations produced 1 hits



():

Annotation Number : LP03188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063127
Gbrowse : chr3R:2525281-2525886 (-) // 99.02 //
Probeset : 1634348_s_at
Accessions : protein= , nucleotide= NR_002492;
FlyMine data for FBgn0063127.
TRiP has 1 RNAi stocks for FBgn0063127 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head2 ± 10 of 4 0.80None
Eye6 ± 12 of 4 1.79None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland11 ± 60 of 4 3.05None
Crop4 ± 20 of 4 1.30None
Midgut1 ± 00 of 4 0.40None
Tubule3 ± 10 of 4 0.90None
Hindgut1 ± 00 of 4 0.50None
Heart1 ± 00 of 4 0.46None
Fat body2 ± 10 of 4 0.59None
Ovary1 ± 00 of 4 0.40None
Testis4 ± 00 of 4 1.10None
Male accessory glands4 ± 10 of 4 1.20None
Virgin spermatheca5 ± 20 of 4 1.59None
Mated spermatheca4 ± 20 of 4 1.09None
Adult carcass6 ± 20 of 4 1.70None
Larval CNS1765 ± 1884 of 4477.11Up
Larval Salivary gland4 ± 10 of 4 1.25None
Larval midgut22 ± 151 of 4 6.03None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.55None
Larval fat body1 ± 00 of 4 0.30None
Larval trachea11 ± 31 of 4 2.97Up
Larval carcass33 ± 53 of 4 9.03Up
S2 cells (growing)1 ± 00 of 4 0.39None
Whole fly3 ± 10 of 4

Looking for FBgn0063127. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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