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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0063261 through 18771 annotations produced 1 hits


late transcript (CG31275):

Annotation Number : CG31275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063261
Gbrowse : chr3R:12576456-12577111 (-) // 100.0 //
Probeset : 1631335_a_at
Accessions : protein= NP_650575; /// NP_732175;, nucleotide= NM_142318; /// NM_169732;
Pathway : 0005856 // cytoskeleton // non-traceable author statement /// 0030286 // dynein complex // inferred from sequence or str
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0042623 // ATPase activity
FlyMine data for FBgn0063261.
BioGrid reports that CG31275 interacts with CG7103 .
VDRC has 2 RNAi stocks for FBgn0063261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.04Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.02Down
Fat body2 ± 20 of 4 0.03Down
Ovary1 ± 10 of 4 0.00Down
Testis1176 ± 764 of 411.00Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca4 ± 20 of 4 0.04Down
Adult carcass4 ± 30 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.03Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body113 ± 583 of 4 1.10None
Larval trachea8 ± 141 of 4 0.08Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly106 ± 104 of 4

Looking for FBgn0063261. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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