Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
Latest news: Our alternative view (http://flyatlas.gla.ac.uk/flyatlas/index.html) is still available.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063485 through 18771 annotations produced 1 hits



Lasp (Lasp):

Annotation Number : CG3849
Flybase ID : FBgn0063485
Gbrowse : chr3L:16670724-16704752 (-) // 100.0 //
Probeset : 1637874_at
Accessions : protein= NP_648912; /// NP_730192;, nucleotide= NM_140655; /// NM_168681;
Pathway : 0005925 // focal adhesion // inferred from direct assay /// 0015629 // actin cytoskeleton // non-traceable author statem
Interpro : 0003779 // actin binding // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annot
FlyMine data for FBgn0063485.
Homophila reports that CG3849 is a close match (6e-11) to human gene NEB;NEM2 (NP_004534), a gene associated with Nemaline myopathy 2, autosomal recessive, 256030 (3).
TRiP has 1 RNAi stocks for FBgn0063485 available for purchase.
VDRC has 4 RNAi stocks for FBgn0063485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 24 of 4 0.30Down
Head49 74 of 4 0.40Down
Eye44 34 of 4 0.34Down
Thoracicoabdominal ganglion43 54 of 4 0.30Down
Salivary gland26 23 of 4 0.20Down
Crop41 14 of 4 0.30Down
Midgut69 34 of 4 0.50Down
Tubule48 24 of 4 0.40Down
Hindgut30 14 of 4 0.20Down
Heart10 13 of 4 0.08Down
Fat body15 24 of 4 0.12Down
Ovary148 34 of 4 1.10None
Testis1217 674 of 4 9.30Up
Male accessory glands37 34 of 4 0.30Down
Virgin spermatheca14 12 of 4 0.11Down
Mated spermatheca15 14 of 4 0.12Down
Adult carcass40 44 of 4 0.30Down
Larval CNS26 24 of 4 0.20Down
Larval Salivary gland18 34 of 4 0.14Down
Larval midgut42 24 of 4 0.32Down
Larval tubule105 54 of 4 0.80None
Larval hindgut48 04 of 4 0.37Down
Larval fat body65 283 of 4 0.50None
Larval trachea35 54 of 4 0.27Down
Larval carcass36 34 of 4 0.28Down
S2 cells (growing)186 54 of 4 1.43Up
Whole fly130 94 of 4

Looking for FBgn0063485. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime