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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063491 through 18771 annotations produced 1 hits



Glutathione S transferase E9 (GstE9):

Annotation Number : CG17534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063491
Gbrowse : chr2R:14296553-14297340 (+) // 100.0 //
Probeset : 1628657_at
Accessions : protein= NP_725784;, nucleotide= NM_166279;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0063491.
VDRC has 1 RNAi stocks for FBgn0063491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 44 of 4 0.10Down
Head1695 ± 1184 of 4 2.80Up
Eye821 ± 1034 of 4 1.37None
Thoracicoabdominal ganglion54 ± 84 of 4 0.10Down
Salivary gland14 ± 40 of 4 0.02Down
Crop742 ± 224 of 4 1.20None
Midgut1944 ± 694 of 4 3.20Up
Tubule65 ± 93 of 4 0.10Down
Hindgut710 ± 314 of 4 1.20None
Heart3030 ± 2414 of 4 5.06Up
Fat body3502 ± 3084 of 4 5.85Up
Ovary89 ± 154 of 4 0.20Down
Testis52 ± 14 of 4 0.10Down
Male accessory glands18 ± 102 of 4 0.00Down
Virgin spermatheca3078 ± 734 of 4 5.14Up
Mated spermatheca2595 ± 2524 of 4 4.33Up
Adult carcass2613 ± 1254 of 4 4.40Up
Larval CNS3 ± 10 of 4 0.01Down
Larval Salivary gland15 ± 20 of 4 0.03Down
Larval midgut573 ± 1144 of 4 0.96None
Larval tubule10 ± 20 of 4 0.00Down
Larval hindgut286 ± 254 of 4 0.48Down
Larval fat body317 ± 674 of 4 0.50Down
Larval trachea44 ± 184 of 4 0.07Down
Larval carcass35 ± 54 of 4 0.06Down
S2 cells (growing)1185 ± 734 of 4 1.98Up
Whole fly599 ± 504 of 4

Looking for FBgn0063491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime