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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063496 through 18771 annotations produced 1 hits



Glutathione S transferase E4 (GstE4):

Annotation Number : CG17525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063496
Gbrowse : chr2R:14290779-14291448 (+) // 100.0 //
Probeset : 1632539_at
Accessions : protein= NP_611326;, nucleotide= NM_137482;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0063496.
VDRC has 2 RNAi stocks for FBgn0063496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 0.30Down
Head524 ± 634 of 419.80Up
Eye78 ± 403 of 4 2.96None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 10 of 4 0.22Down
Crop2 ± 10 of 4 0.10Down
Midgut5 ± 20 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.11Down
Fat body2 ± 30 of 4 0.10Down
Ovary2 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands7 ± 00 of 4 0.30Down
Virgin spermatheca3 ± 00 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass7 ± 30 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.10Down
Larval Salivary gland5 ± 10 of 4 0.21Down
Larval midgut3 ± 10 of 4 0.12Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.14Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass3 ± 10 of 4 0.14Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly26 ± 24 of 4

Looking for FBgn0063496. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime