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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0063498 through 18771 annotations produced 1 hits

Glutathione S transferase E2 (GstE2):

Annotation Number : CG17523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063498
Gbrowse : chr2R:14286992-14287884 (+) // 100.0 //
Probeset : 1641429_at
Accessions : protein= NP_611324;, nucleotide= NM_137480;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0063498.
VDRC has 1 RNAi stocks for FBgn0063498 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain583 174 of 426.40Up
Head268 94 of 412.10Up
Eye283 54 of 412.83Up
Thoracicoabdominal ganglion624 214 of 428.30Up
Salivary gland17 22 of 4 0.79None
Crop39 14 of 4 1.80Up
Midgut9 22 of 4 0.40Down
Tubule42 14 of 4 1.90Up
Hindgut28 24 of 4 1.30None
Heart97 64 of 4 4.40Up
Fat body11 44 of 4 0.50Down
Ovary4 11 of 4 0.20Down
Testis19 14 of 4 0.90None
Male accessory glands15 14 of 4 0.70None
Virgin spermatheca16 04 of 4 0.75None
Mated spermatheca17 33 of 4 0.79None
Adult carcass31 24 of 4 1.40Up
Larval CNS158 224 of 4 7.17Up
Larval Salivary gland8 14 of 4 0.38Down
Larval midgut7 10 of 4 0.35Down
Larval tubule6 12 of 4 0.30Down
Larval hindgut8 13 of 4 0.37Down
Larval fat body7 21 of 4 0.40Down
Larval trachea11 33 of 4 0.54Down
Larval carcass12 14 of 4 0.58Down
S2 cells (growing)544 144 of 424.63Up
Whole fly22 24 of 4

Looking for FBgn0063498. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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