FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0063649 through 18771 annotations produced 2 hits

(CG6006):

Annotation Number : CG6006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063649
Gbrowse : chr3R:11983882-11996532 (+) // 100.0 //
Probeset : 1630563_at
Accessions : protein= NP_001097812; /// NP_650525;, nucleotide= NM_001104342; /// NM_142268;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015226 // carnitine transporter activity //
FlyMine data for FBgn0063649.
Homophila reports that CG6006 is a close match (4e-15) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 3 RNAi stocks for FBgn0063649 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	81 ± 1	4 of 4	3.80	Up
Head	38 ± 7	4 of 4	1.80	None
Eye	19 ± 3	4 of 4	0.92	None
Thoracicoabdominal ganglion	42 ± 1	4 of 4	1.90	Up
Salivary gland	7 ± 2	0 of 4	0.33	Down
Crop	55 ± 3	4 of 4	2.60	Up
Midgut	22 ± 1	0 of 4	1.00	None
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	126 ± 6	4 of 4	5.90	Up
Heart	9 ± 3	2 of 4	0.42	Down
Fat body	7 ± 5	0 of 4	0.33	Down
Ovary	11 ± 1	0 of 4	0.50	None
Testis	23 ± 1	2 of 4	1.10	None
Male accessory glands	22 ± 2	0 of 4	1.00	None
Virgin spermatheca	7 ± 2	0 of 4	0.32	Down
Mated spermatheca	10 ± 2	1 of 4	0.48	Down
Adult carcass	20 ± 2	1 of 4	0.90	None
Larval CNS	25 ± 5	4 of 4	1.19	None
Larval Salivary gland	1 ± 0	0 of 4	0.09	Down
Larval midgut	18 ± 3	0 of 4	0.87	None
Larval tubule	4 ± 1	0 of 4	0.20	Down
Larval hindgut	73 ± 9	4 of 4	3.43	Up
Larval fat body	6 ± 2	0 of 4	0.30	Down
Larval trachea	28 ± 8	3 of 4	1.32	None
Larval carcass	34 ± 5	3 of 4	1.61	None
S2 cells (growing)	10 ± 1	0 of 4	0.49	Down
Whole fly	21 ± 3	3 of 4

(CG6006):

Annotation Number : HDC13893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063649
Gbrowse : chr3R:11983738-11985945 (+) // 100.0 //
Probeset : 1627756_at
Accessions : protein= NP_001097812; /// NP_650525;, nucleotide= NM_001104342; /// NM_142268;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015226 // carnitine transporter activity //
FlyMine data for FBgn0063649.
VDRC has 3 RNAi stocks for FBgn0063649 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 2	0 of 4	1.70	None
Head	3 ± 1	0 of 4	1.70	None
Eye	3 ± 1	0 of 4	1.55	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.00	None
Salivary gland	6 ± 3	0 of 4	2.91	None
Crop	4 ± 0	0 of 4	1.80	None
Midgut	1 ± 0	0 of 4	0.80	None
Tubule	1 ± 0	0 of 4	0.80	None
Hindgut	5 ± 2	0 of 4	2.60	None
Heart	3 ± 1	0 of 4	1.45	None
Fat body	1 ± 0	0 of 4	0.71	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	2 ± 0	0 of 4	0.90	None
Male accessory glands	4 ± 2	0 of 4	1.80	None
Virgin spermatheca	3 ± 1	0 of 4	1.40	None
Mated spermatheca	3 ± 1	0 of 4	1.36	None
Adult carcass	4 ± 2	0 of 4	2.10	None
Larval CNS	2 ± 1	0 of 4	1.33	None
Larval Salivary gland	2 ± 0	0 of 4	1.16	None
Larval midgut	1 ± 0	0 of 4	0.78	None
Larval tubule	1 ± 0	0 of 4	0.70	None
Larval hindgut	3 ± 1	0 of 4	1.39	None
Larval fat body	1 ± 1	0 of 4	0.90	None
Larval trachea	1 ± 0	0 of 4	0.65	None
Larval carcass	1 ± 0	0 of 4	0.87	None
S2 cells (growing)	2 ± 0	0 of 4	1.04	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0063649. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720