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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0063923 through 18771 annotations produced 2 hits



KAZ1 type alpha /// KAZ1 type E (Kaz1-ORFA /// Kaz1-ORFB):

Annotation Number : CG33045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063923 /// FBgn0063924
Gbrowse : chr3L:216538-218071 (+) // 100.0 //
Probeset : 1629906_s_at
Accessions : protein= NP_001027090; /// NP_001027091; /// NP_612013; /// NP_728493; /// NP_728495; /// NP_728496; /// NP_728497;, nucleotide= NM_001031919; /// NM_001031920; /// NM_138169; /// NM_167807; /// NM_167809; /// NM_167810; /// NM_167811;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // non-traceable author statement /// 0008233 // peptidase activ
FlyMine data for FBgn0063923 /// FBgn0063924.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 34 of 4 0.40Down
Head576 964 of 4 3.60Up
Eye263 374 of 4 1.63None
Thoracicoabdominal ganglion90 34 of 4 0.60Down
Salivary gland83 84 of 4 0.52Down
Crop117 44 of 4 0.70None
Midgut62 24 of 4 0.40Down
Tubule19 23 of 4 0.10Down
Hindgut273 34 of 4 1.70Up
Heart815 384 of 4 5.02Up
Fat body1344 1744 of 4 8.28Up
Ovary23 34 of 4 0.10Down
Testis207 64 of 4 1.30None
Male accessory glands25 30 of 4 0.20Down
Virgin spermatheca1976 1004 of 412.17Up
Mated spermatheca1040 1194 of 4 6.41Up
Adult carcass824 564 of 4 5.10Up
Larval CNS62 94 of 4 0.38Down
Larval Salivary gland87 74 of 4 0.54Down
Larval midgut70 54 of 4 0.43Down
Larval tubule7 00 of 4 0.00Down
Larval hindgut395 384 of 4 2.43Up
Larval fat body1993 2904 of 412.30Up
Larval trachea883 1074 of 4 5.44Up
Larval carcass280 224 of 4 1.72Up
S2 cells (growing)451 244 of 4 2.78Up
Whole fly162 164 of 4



KAZ1 type alpha /// KAZ1 type E (Kaz1-ORFA /// Kaz1-ORFB):

Annotation Number : CG33045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0063923 /// FBgn0063924
Gbrowse : chr3L:216538-218071 (+) // 100.0 //
Probeset : 1623848_a_at
Accessions : protein= NP_001027090; /// NP_001027091; /// NP_612013; /// NP_728493; /// NP_728495; /// NP_728496; /// NP_728497;, nucleotide= NM_001031919; /// NM_001031920; /// NM_138169; /// NM_167807; /// NM_167809; /// NM_167810; /// NM_167811;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // non-traceable author statement /// 0008233 // peptidase activ
FlyMine data for FBgn0063923 /// FBgn0063924.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.70None
Head7 13 of 4 1.30None
Eye9 00 of 4 1.65None
Thoracicoabdominal ganglion6 10 of 4 1.10None
Salivary gland14 30 of 4 2.50None
Crop6 00 of 4 1.10None
Midgut6 01 of 4 1.20None
Tubule5 00 of 4 1.00None
Hindgut11 11 of 4 1.90Up
Heart9 03 of 4 1.76None
Fat body39 44 of 4 7.03Up
Ovary3 00 of 4 0.70None
Testis2 10 of 4 0.50None
Male accessory glands7 20 of 4 1.30None
Virgin spermatheca73 44 of 412.87Up
Mated spermatheca48 74 of 4 8.49Up
Adult carcass23 14 of 4 4.20Up
Larval CNS5 12 of 4 0.99None
Larval Salivary gland12 41 of 4 2.26None
Larval midgut4 10 of 4 0.85None
Larval tubule4 10 of 4 0.80None
Larval hindgut10 04 of 4 1.88Up
Larval fat body34 53 of 4 6.00Up
Larval trachea13 23 of 4 2.45Up
Larval carcass9 01 of 4 1.74None
S2 cells (growing)19 34 of 4 3.39Up
Whole fly5 10 of 4

Looking for FBgn0063923. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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