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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0064116 through 18771 annotations produced 1 hits



/// (CG33713 /// CG33714):

Annotation Number : CG33071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0064116 /// FBgn0064117
Gbrowse : chrX:21188960-21190299 (-) // 100.0 //
Probeset : 1636626_s_at
Accessions : protein= NP_001027083; /// NP_001027084; /// NP_001027085; /// NP_001027086;, nucleotide= NM_001031912; /// NM_001031913; /// NM_001031914; /// NM_001031915;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0064116 /// FBgn0064117.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain932 84 of 4 1.70Up
Head662 214 of 4 1.20None
Eye983 434 of 4 1.76Up
Thoracicoabdominal ganglion1064 384 of 4 1.90Up
Salivary gland937 64 of 4 1.68Up
Crop586 174 of 4 1.10None
Midgut426 164 of 4 0.80Down
Tubule803 394 of 4 1.40Up
Hindgut882 164 of 4 1.60Up
Heart650 44 of 4 1.17None
Fat body648 964 of 4 1.16None
Ovary719 164 of 4 1.30Up
Testis517 84 of 4 0.90None
Male accessory glands1197 194 of 4 2.10Up
Virgin spermatheca669 114 of 4 1.20Up
Mated spermatheca667 624 of 4 1.20None
Adult carcass582 154 of 4 1.00None
Larval CNS877 454 of 4 1.57Up
Larval Salivary gland1141 504 of 4 2.05Up
Larval midgut479 434 of 4 0.86None
Larval tubule410 174 of 4 0.70Down
Larval hindgut980 584 of 4 1.76Up
Larval fat body304 254 of 4 0.50Down
Larval trachea962 744 of 4 1.73Up
Larval carcass828 624 of 4 1.49Up
S2 cells (growing)655 114 of 4 1.18None
Whole fly557 364 of 4

Looking for FBgn0064116. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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