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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0064123 through 18771 annotations produced 1 hits



/// CG33670 (CG11566 /// stg1):

Annotation Number : CG32514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031159 /// FBgn0064123
Gbrowse : chrX:20964870-20982444 (+) // 100.0 //
Probeset : 1634256_a_at
Accessions : protein= NP_001027081; /// NP_001027082;, nucleotide= NM_001031910; /// NM_001031911;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031159 /// FBgn0064123.
BioGrid reports that CG32514 interacts with CG7570 CG7856 CG3510 CG4617 CG4991 CG5441 CG5708 CG6692 CG7109 CG7260 CG7392 CG7660 CG8854 CG9083 CG9392 CG9660 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 24 of 417.80Up
Head11 13 of 4 2.80Up
Eye4 21 of 4 1.22None
Thoracicoabdominal ganglion15 33 of 4 4.00Up
Salivary gland19 62 of 4 4.85None
Crop7 11 of 4 1.80None
Midgut10 00 of 4 2.60Up
Tubule4 10 of 4 1.10None
Hindgut4 10 of 4 1.00None
Heart4 10 of 4 1.09None
Fat body6 50 of 4 1.62None
Ovary1 00 of 4 0.40None
Testis5 00 of 4 1.30None
Male accessory glands6 30 of 4 1.70None
Virgin spermatheca9 01 of 4 2.30Up
Mated spermatheca7 11 of 4 1.99None
Adult carcass1 00 of 4 0.40None
Larval CNS27 44 of 4 6.79Up
Larval Salivary gland17 20 of 4 4.34Up
Larval midgut10 30 of 4 2.62None
Larval tubule5 10 of 4 1.40None
Larval hindgut2 00 of 4 0.68None
Larval fat body2 00 of 4 0.60None
Larval trachea3 10 of 4 0.89None
Larval carcass7 10 of 4 1.90None
S2 cells (growing)19 24 of 4 4.81Up
Whole fly4 10 of 4

Looking for FBgn0064123. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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