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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0064912 through 18771 annotations produced 1 hits



/// CG31178 (CG31178 /// DsimGD20903):

Annotation Number : CG31178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0064912
Gbrowse : chr3R:17699460-17700649 (+) // 100.0 //
Probeset : 1630353_at
Accessions : protein= NP_001036407; /// NP_001036408; /// NP_001036409; /// NP_001036410; /// NP_001036411; /// NP_001036412; /// NP_001138096; /// NP_732673;, nucleotide= NM_001042942; /// NM_001042943; /// NM_001042944; /// NM_001042945; /// NM_001042946; /// NM_001042947; /// NM_001144624; /// NM_169978;
FlyMine data for FBgn0064912.
VDRC has 3 RNAi stocks for FBgn0064912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland15 31 of 4 0.09Down
Crop4 20 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.01Down
Fat body6 32 of 4 0.04Down
Ovary3 00 of 4 0.00Down
Testis1829 194 of 410.40Up
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.01Down
Mated spermatheca3 10 of 4 0.02Down
Adult carcass6 10 of 4 0.00Down
Larval CNS4 11 of 4 0.02Down
Larval Salivary gland5 00 of 4 0.03Down
Larval midgut6 11 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.02Down
Larval fat body227 1164 of 4 1.30None
Larval trachea12 162 of 4 0.07Down
Larval carcass3 10 of 4 0.02Down
S2 cells (growing)3 00 of 4 0.02Down
Whole fly175 74 of 4

Looking for FBgn0064912. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime