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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0065035 through 18771 annotations produced 1 hits



AlkB (AlkB):

Annotation Number : AlkB
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0065035
Gbrowse : chrX:15752166-15753520 (-) // 100.0 //
Probeset : 1624861_at
Accessions : protein= NP_996458;, nucleotide= NM_206735;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation
FlyMine data for FBgn0065035.
VDRC has 2 RNAi stocks for FBgn0065035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 0.30Down
Head39 24 of 4 0.50Down
Eye43 24 of 4 0.56Down
Thoracicoabdominal ganglion21 24 of 4 0.30Down
Salivary gland128 74 of 4 1.66Up
Crop96 24 of 4 1.20Up
Midgut52 24 of 4 0.70Down
Tubule91 64 of 4 1.20Up
Hindgut85 54 of 4 1.10None
Heart50 24 of 4 0.65Down
Fat body53 54 of 4 0.69Down
Ovary165 84 of 4 2.10Up
Testis11 14 of 4 0.20Down
Male accessory glands74 44 of 4 1.00None
Virgin spermatheca45 34 of 4 0.59Down
Mated spermatheca71 104 of 4 0.93None
Adult carcass42 14 of 4 0.60Down
Larval CNS80 44 of 4 1.03None
Larval Salivary gland102 74 of 4 1.32Up
Larval midgut54 44 of 4 0.69Down
Larval tubule141 54 of 4 1.80Up
Larval hindgut79 34 of 4 1.02None
Larval fat body37 44 of 4 0.50Down
Larval trachea114 164 of 4 1.47Up
Larval carcass62 24 of 4 0.81Down
S2 cells (growing)103 54 of 4 1.33Up
Whole fly77 34 of 4

Looking for FBgn0065035. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime