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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0065108 through 18771 annotations produced 1 hits



pickpocket 16 (ppk16):

Annotation Number : CG4110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0065108
Gbrowse : chr2L:9771154-9775030 (-) // 100.0 //
Probeset : 1634799_at
Accessions : protein= NP_001033886;, nucleotide= NM_001038797;
Pathway : open tracheal system // inferred from mutant phenotype /// 0050914 // sensory perception of salty taste // inferred fro
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0065108.
TRiP has 1 RNAi stocks for FBgn0065108 available for purchase.
VDRC has 2 RNAi stocks for FBgn0065108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.60None
Head7 22 of 4 1.40None
Eye5 00 of 4 0.91None
Thoracicoabdominal ganglion5 11 of 4 0.90None
Salivary gland10 40 of 4 1.87None
Crop9 23 of 4 1.70None
Midgut13 13 of 4 2.50Up
Tubule6 00 of 4 1.10None
Hindgut6 12 of 4 1.20None
Heart7 02 of 4 1.41None
Fat body8 11 of 4 1.53None
Ovary2 00 of 4 0.50Down
Testis6 04 of 4 1.20None
Male accessory glands11 10 of 4 2.00Up
Virgin spermatheca4 11 of 4 0.78None
Mated spermatheca5 11 of 4 1.03None
Adult carcass11 11 of 4 2.00None
Larval CNS5 23 of 4 1.00None
Larval Salivary gland13 33 of 4 2.38None
Larval midgut7 11 of 4 1.43None
Larval tubule5 11 of 4 1.10None
Larval hindgut5 12 of 4 0.91None
Larval fat body5 10 of 4 1.10None
Larval trachea2 10 of 4 0.52None
Larval carcass4 10 of 4 0.75None
S2 cells (growing)6 03 of 4 1.19None
Whole fly5 02 of 4

Looking for FBgn0065108. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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