FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0066101 through 18771 annotations produced 2 hits

yolkless-like (LpR1):

Annotation Number : CG4861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0066101
Gbrowse : chr3R:21567069-21578717 (-) // 100.0 //
Probeset : 1637280_at
Accessions : protein= NP_001097931; /// NP_001097932; /// NP_001097933; /// NP_001097934; /// NP_001163734; /// NP_733119; /// NP_996296;, nucleotide= NM_001104461; /// NM_001104462; /// NM_001104463; /// NM_001104464; /// NM_001170263; /// NM_170240; /// NM_206573;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from mutant phenotype /// 0005041 // low-density lipoprotein receptor activity
FlyMine data for FBgn0066101.
BDGP gene expression has embryonic in situ data for LpR1: 13 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0066101 available for purchase.
VDRC has 2 RNAi stocks for FBgn0066101 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	913 ± 12	4 of 4	4.30	Up
Head	245 ± 17	4 of 4	1.20	None
Eye	235 ± 4	4 of 4	1.11	None
Thoracicoabdominal ganglion	811 ± 51	4 of 4	3.80	Up
Salivary gland	41 ± 3	4 of 4	0.19	Down
Crop	61 ± 3	4 of 4	0.30	Down
Midgut	506 ± 5	4 of 4	2.40	Up
Tubule	55 ± 2	4 of 4	0.30	Down
Hindgut	83 ± 4	4 of 4	0.40	Down
Heart	1636 ± 44	4 of 4	7.74	Up
Fat body	976 ± 84	4 of 4	4.62	Up
Ovary	127 ± 3	4 of 4	0.60	Down
Testis	52 ± 4	4 of 4	0.20	Down
Male accessory glands	63 ± 4	4 of 4	0.30	Down
Virgin spermatheca	50 ± 0	4 of 4	0.24	Down
Mated spermatheca	47 ± 10	4 of 4	0.23	Down
Adult carcass	774 ± 26	4 of 4	3.70	Up
Larval CNS	187 ± 27	4 of 4	0.89	None
Larval Salivary gland	84 ± 4	4 of 4	0.40	Down
Larval midgut	302 ± 39	4 of 4	1.43	None
Larval tubule	28 ± 2	4 of 4	0.10	Down
Larval hindgut	52 ± 3	4 of 4	0.25	Down
Larval fat body	39 ± 2	4 of 4	0.20	Down
Larval trachea	136 ± 14	4 of 4	0.65	Down
Larval carcass	147 ± 21	4 of 4	0.70	Down
S2 cells (growing)	11 ± 1	4 of 4	0.05	Down
Whole fly	211 ± 11	4 of 4

yolkless-like (LpR1):

Annotation Number : CG31095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0066101
Gbrowse : chr3R:21580052-21586044 (-) // 100.0 //
Probeset : 1627536_at
Accessions : protein= NP_001097931; /// NP_001097932; /// NP_001097933; /// NP_001097934; /// NP_001163734; /// NP_733119; /// NP_996296;, nucleotide= NM_001104461; /// NM_001104462; /// NM_001104463; /// NM_001104464; /// NM_001170263; /// NM_170240; /// NM_206573;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from mutant phenotype /// 0005041 // low-density lipoprotein receptor activity
FlyMine data for FBgn0066101.
BDGP gene expression has embryonic in situ data for LpR1: 13 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0066101 available for purchase.
VDRC has 2 RNAi stocks for FBgn0066101 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	4 of 4	0.90	None
Head	5 ± 1	2 of 4	0.50	Down
Eye	1 ± 0	0 of 4	0.12	Down
Thoracicoabdominal ganglion	5 ± 1	1 of 4	0.40	Down
Salivary gland	3 ± 1	0 of 4	0.25	Down
Crop	7 ± 1	2 of 4	0.50	None
Midgut	20 ± 2	4 of 4	1.60	None
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	2 ± 0	0 of 4	0.20	Down
Heart	15 ± 1	4 of 4	1.18	None
Fat body	18 ± 17	2 of 4	1.45	None
Ovary	15 ± 2	4 of 4	1.20	None
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	1 ± 1	0 of 4	0.13	Down
Mated spermatheca	1 ± 0	0 of 4	0.12	Down
Adult carcass	41 ± 8	4 of 4	3.20	Up
Larval CNS	1 ± 0	0 of 4	0.13	Down
Larval Salivary gland	1 ± 0	0 of 4	0.11	Down
Larval midgut	1 ± 0	0 of 4	0.08	Down
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	0 ± 0	0 of 4	0.05	Down
Larval fat body	2 ± 0	0 of 4	0.20	Down
Larval trachea	2 ± 2	1 of 4	0.23	Down
Larval carcass	3 ± 1	0 of 4	0.26	Down
S2 cells (growing)	0 ± 0	0 of 4	0.07	Down
Whole fly	12 ± 1	3 of 4

Looking for FBgn0066101. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720