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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0066304 through 18771 annotations produced 1 hits



/// Rpp20 (CG33932 /// Rpp20):

Annotation Number : CG32530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0066303 /// FBgn0066304
Gbrowse : chrX:19638465-19639780 (+) // 100.0 // /// chrUextra:4176865-4177793 (-) // 74.64 // /// chrUextra:5521090-5521902 (-) // 65.3 //
Probeset : 1628529_a_at
Accessions : protein= NP_001027078; /// NP_001027079;, nucleotide= NM_001031907; /// NM_001031908;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004526 // ribonuclease P activity // inferre
FlyMine data for FBgn0066303 /// FBgn0066304.
BioGrid reports that CG32530 interacts with CG9422 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain244 ± 24 of 4 1.30None
Head230 ± 244 of 4 1.20None
Eye550 ± 114 of 4 2.91Up
Thoracicoabdominal ganglion209 ± 64 of 4 1.10None
Salivary gland306 ± 104 of 4 1.63Up
Crop206 ± 34 of 4 1.10None
Midgut199 ± 84 of 4 1.10None
Tubule180 ± 24 of 4 1.00Down
Hindgut216 ± 74 of 4 1.10None
Heart233 ± 154 of 4 1.24None
Fat body126 ± 84 of 4 0.67Down
Ovary296 ± 34 of 4 1.60Up
Testis89 ± 34 of 4 0.50Down
Male accessory glands284 ± 144 of 4 1.50Up
Virgin spermatheca126 ± 74 of 4 0.67Down
Mated spermatheca141 ± 114 of 4 0.75None
Adult carcass205 ± 94 of 4 1.10None
Larval CNS323 ± 214 of 4 1.71Up
Larval Salivary gland300 ± 144 of 4 1.59Up
Larval midgut157 ± 44 of 4 0.83None
Larval tubule143 ± 24 of 4 0.80None
Larval hindgut163 ± 14 of 4 0.87None
Larval fat body113 ± 44 of 4 0.60Down
Larval trachea332 ± 274 of 4 1.76Up
Larval carcass185 ± 44 of 4 0.98None
S2 cells (growing)352 ± 134 of 4 1.87Up
Whole fly188 ± 194 of 4

Looking for FBgn0066304. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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