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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0067317 through 18771 annotations produced 1 hits



Chibby (Cby):

Annotation Number : CG13415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067317
Gbrowse : chr3R:17694045-17694348 (+) // 100.0 //
Probeset : 1625135_at
Accessions : protein= NP_650989;, nucleotide= NM_142732;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0067317.
BioGrid reports that CG13415 interacts with CG15576 .
VDRC has 3 RNAi stocks for FBgn0067317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head11 10 of 4 1.40None
Eye4 10 of 4 0.59None
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland3 00 of 4 0.42Down
Crop1 00 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule3 00 of 4 0.50Down
Hindgut1 00 of 4 0.20Down
Heart0 00 of 4 0.06Down
Fat body1 00 of 4 0.18Down
Ovary1 00 of 4 0.20Down
Testis106 34 of 413.40Up
Male accessory glands4 10 of 4 0.50None
Virgin spermatheca1 00 of 4 0.22Down
Mated spermatheca1 00 of 4 0.24Down
Adult carcass3 00 of 4 0.40Down
Larval CNS2 20 of 4 0.26Down
Larval Salivary gland1 00 of 4 0.13Down
Larval midgut1 00 of 4 0.12Down
Larval tubule2 10 of 4 0.30Down
Larval hindgut0 00 of 4 0.12Down
Larval fat body15 61 of 4 1.90None
Larval trachea0 00 of 4 0.08Down
Larval carcass0 00 of 4 0.11Down
S2 cells (growing)3 10 of 4 0.44Down
Whole fly8 00 of 4

Looking for FBgn0067317. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime