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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0067622 through 18771 annotations produced 1 hits



/// Like Sm protein 4 (CG17768 /// LSm-4):

Annotation Number : CG31990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032240 /// FBgn0067622
Gbrowse : chr2L:10403196-10405175 (-) // 100.0 //
Probeset : 1626203_at
Accessions : protein= NP_001027236; /// NP_001027237;, nucleotide= NM_001032065; /// NM_001032066;
Pathway : via spliceosome // inferred from mutant phenotype"
FlyMine data for FBgn0032240 /// FBgn0067622.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 74 of 4 1.30Up
Head169 124 of 4 0.90None
Eye206 64 of 4 1.08None
Thoracicoabdominal ganglion223 124 of 4 1.20None
Salivary gland136 54 of 4 0.71Down
Crop131 54 of 4 0.70Down
Midgut129 54 of 4 0.70Down
Tubule85 44 of 4 0.40Down
Hindgut159 74 of 4 0.80Down
Heart163 84 of 4 0.85Down
Fat body102 54 of 4 0.53Down
Ovary286 164 of 4 1.50Up
Testis108 34 of 4 0.60Down
Male accessory glands168 84 of 4 0.90None
Virgin spermatheca76 74 of 4 0.40Down
Mated spermatheca85 104 of 4 0.44Down
Adult carcass98 34 of 4 0.50Down
Larval CNS303 94 of 4 1.58Up
Larval Salivary gland339 54 of 4 1.77Up
Larval midgut91 84 of 4 0.48Down
Larval tubule147 54 of 4 0.80Down
Larval hindgut139 64 of 4 0.72Down
Larval fat body157 114 of 4 0.80Down
Larval trachea222 184 of 4 1.16Up
Larval carcass125 34 of 4 0.65Down
S2 cells (growing)194 74 of 4 1.01None
Whole fly192 64 of 4

Looking for FBgn0067622. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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