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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0067779 through 18771 annotations produced 1 hits



debra (dbr):

Annotation Number : CG11371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067779
Gbrowse : chr2L:67043-71390 (+) // 100.0 //
Probeset : 1628243_at
Accessions : protein= NP_608486;, nucleotide= NM_134642;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005771 // multivesicular body // inferred from direct ass
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0067779.
BioGrid reports that CG11371 interacts with CG6338 .
VDRC has 3 RNAi stocks for FBgn0067779 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 84 of 4 1.10None
Head118 ± 54 of 4 0.80Down
Eye100 ± 44 of 4 0.67Down
Thoracicoabdominal ganglion127 ± 54 of 4 0.90None
Salivary gland129 ± 144 of 4 0.86None
Crop153 ± 54 of 4 1.00None
Midgut103 ± 64 of 4 0.70Down
Tubule97 ± 54 of 4 0.60Down
Hindgut132 ± 54 of 4 0.90None
Heart79 ± 54 of 4 0.53Down
Fat body126 ± 64 of 4 0.84Down
Ovary406 ± 104 of 4 2.70Up
Testis48 ± 24 of 4 0.30Down
Male accessory glands250 ± 124 of 4 1.70Up
Virgin spermatheca130 ± 184 of 4 0.87None
Mated spermatheca141 ± 114 of 4 0.94None
Adult carcass132 ± 114 of 4 0.90None
Larval CNS230 ± 324 of 4 1.54Up
Larval Salivary gland161 ± 114 of 4 1.08None
Larval midgut117 ± 154 of 4 0.79None
Larval tubule108 ± 54 of 4 0.70Down
Larval hindgut124 ± 74 of 4 0.83None
Larval fat body415 ± 324 of 4 2.80Up
Larval trachea149 ± 154 of 4 1.00None
Larval carcass143 ± 24 of 4 0.96None
S2 cells (growing)115 ± 54 of 4 0.77Down
Whole fly149 ± 74 of 4

Looking for FBgn0067779. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime