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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0067783 through 18771 annotations produced 1 hits



alternative testis transcripts /// alternative testis transcripts (att-ORFA /// att-ORFB):

Annotation Number : CG4241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067782 /// FBgn0067783
Gbrowse : chr3R:16378630-16383403 (-) // 100.0 //
Probeset : 1633573_a_at
Accessions : protein= NP_650891; /// NP_732519; /// NP_996244; /// NP_996245;, nucleotide= NM_142634; /// NM_169901; /// NM_206522; /// NM_206523;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0067782 /// FBgn0067783.
Homophila reports that CG4241 is a close match (5e-11) to human gene SLC25A22;GC1 (NP_078974), a gene associated with Epilepsy, neonatal myoclonic, with suppression-burst pattern, 609304 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 44 of 4 1.50Up
Head152 ± 54 of 4 1.30Up
Eye110 ± 54 of 4 0.92None
Thoracicoabdominal ganglion166 ± 64 of 4 1.40Up
Salivary gland202 ± 154 of 4 1.69Up
Crop108 ± 44 of 4 0.90None
Midgut123 ± 64 of 4 1.00None
Tubule231 ± 214 of 4 1.90Up
Hindgut146 ± 124 of 4 1.20None
Heart159 ± 74 of 4 1.33Up
Fat body150 ± 354 of 4 1.26None
Ovary104 ± 24 of 4 0.90Down
Testis378 ± 104 of 4 3.20Up
Male accessory glands106 ± 104 of 4 0.90None
Virgin spermatheca126 ± 24 of 4 1.05None
Mated spermatheca93 ± 64 of 4 0.78Down
Adult carcass228 ± 54 of 4 1.90Up
Larval CNS35 ± 14 of 4 0.29Down
Larval Salivary gland39 ± 44 of 4 0.33Down
Larval midgut60 ± 34 of 4 0.51Down
Larval tubule181 ± 64 of 4 1.50Up
Larval hindgut55 ± 24 of 4 0.46Down
Larval fat body221 ± 164 of 4 1.80Up
Larval trachea41 ± 64 of 4 0.35Down
Larval carcass67 ± 64 of 4 0.57Down
S2 cells (growing)46 ± 24 of 4 0.38Down
Whole fly119 ± 24 of 4

Looking for FBgn0067783. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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