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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0067861 through 18771 annotations produced 1 hits


Sdic:CG9580 (Sdic1):

Annotation Number : CG9580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067861
Gbrowse : chrX:20068249-20072637 (-) // 99.75 // /// chrX:20075610-20096060 (-) // 94.75 // /// chrX:20099043-20106147 (-) // 90.89 //
Probeset : 1631477_a_at
Accessions : protein= NP_524670;, nucleotide= NM_079931;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0067861.
Homophila reports that CG9580 is a close match (8e-12) to human gene CILD1;DNAI1;ICS;PCD (NP_036276), a gene associated with Ciliary dyskinesia, primary, 1, 242650 (3);Kartagener syndrome, 244400 (3).
VDRC has 3 RNAi stocks for FBgn0067861 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head3 ± 01 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland10 ± 41 of 4 0.16Down
Crop4 ± 01 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 11 of 4 0.10Down
Heart1 ± 10 of 4 0.03Down
Fat body4 ± 10 of 4 0.07Down
Ovary3 ± 02 of 4 0.00Down
Testis939 ± 454 of 414.80Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.05Down
Mated spermatheca3 ± 11 of 4 0.06Down
Adult carcass11 ± 21 of 4 0.20Down
Larval CNS1 ± 11 of 4 0.03Down
Larval Salivary gland5 ± 11 of 4 0.08Down
Larval midgut4 ± 00 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut3 ± 01 of 4 0.05Down
Larval fat body102 ± 564 of 4 1.60None
Larval trachea5 ± 22 of 4 0.08Down
Larval carcass4 ± 11 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly63 ± 44 of 4

Looking for FBgn0067861. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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