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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0069242 through 18771 annotations produced 1 hits



eclair (eca):

Annotation Number : CG33104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0069242
Gbrowse : chr3R:5510187-5511253 (-) // 100.0 // /// chr3R:5517754-5518573 (-) // 75.3 //
Probeset : 1629234_at
Accessions : protein= NP_788616;, nucleotide= NM_176439;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0069242.
BioGrid reports that CG33104 interacts with CG5174 CG7813 .
VDRC has 3 RNAi stocks for FBgn0069242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain313 ± 14 of 4 0.70Down
Head482 ± 304 of 4 1.00None
Eye756 ± 274 of 4 1.57Up
Thoracicoabdominal ganglion412 ± 224 of 4 0.90None
Salivary gland3752 ± 1764 of 4 7.80Up
Crop751 ± 164 of 4 1.60Up
Midgut761 ± 124 of 4 1.60Up
Tubule1045 ± 604 of 4 2.20Up
Hindgut477 ± 144 of 4 1.00None
Heart774 ± 294 of 4 1.61Up
Fat body1222 ± 854 of 4 2.54Up
Ovary575 ± 204 of 4 1.20Up
Testis423 ± 134 of 4 0.90None
Male accessory glands3942 ± 1174 of 4 8.20Up
Virgin spermatheca1744 ± 764 of 4 3.63Up
Mated spermatheca1755 ± 1214 of 4 3.65Up
Adult carcass628 ± 324 of 4 1.30Up
Larval CNS579 ± 284 of 4 1.21Up
Larval Salivary gland4504 ± 1374 of 4 9.37Up
Larval midgut789 ± 204 of 4 1.64Up
Larval tubule842 ± 304 of 4 1.80Up
Larval hindgut747 ± 164 of 4 1.55Up
Larval fat body1160 ± 964 of 4 2.40Up
Larval trachea877 ± 914 of 4 1.82Up
Larval carcass934 ± 474 of 4 1.94Up
S2 cells (growing)1242 ± 154 of 4 2.58Up
Whole fly480 ± 214 of 4

Looking for FBgn0069242. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime