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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0082582 through 18771 annotations produced 1 hits



Tropomodulin (tmod):

Annotation Number : CG1539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0082582
Gbrowse : chr3R:26358335-26404627 (+) // 100.0 //
Probeset : 1626016_s_at
Accessions : protein= NP_001097982; /// NP_001163775; /// NP_001163776; /// NP_001163777; /// NP_477031; /// NP_477032; /// NP_733382; /// NP_733383; /// NP_733384; /// NP_733385;, nucleotide= NM_001104512; /// NM_001170304; /// NM_001170305; /// NM_001170306; /// NM_057683; /// NM_057684; /// NM_170503; /// NM_170504; /// NM_170505; /// NM_170506;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation /// 0045169 // fusome // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0082582.
BioGrid reports that CG1539 interacts with CG6757 CG3779 .
TRiP has 2 RNAi stocks for FBgn0082582 available for purchase.
VDRC has 3 RNAi stocks for FBgn0082582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain426 74 of 4 1.40Up
Head388 434 of 4 1.30None
Eye709 554 of 4 2.40Up
Thoracicoabdominal ganglion397 184 of 4 1.30Up
Salivary gland191 154 of 4 0.65Down
Crop610 84 of 4 2.10Up
Midgut180 124 of 4 0.60Down
Tubule170 114 of 4 0.60Down
Hindgut457 154 of 4 1.50Up
Heart633 544 of 4 2.14Up
Fat body113 34 of 4 0.38Down
Ovary181 24 of 4 0.60Down
Testis121 64 of 4 0.40Down
Male accessory glands1406 454 of 4 4.80Up
Virgin spermatheca60 14 of 4 0.20Down
Mated spermatheca100 54 of 4 0.34Down
Adult carcass565 594 of 4 1.90Up
Larval CNS502 334 of 4 1.70Up
Larval Salivary gland198 104 of 4 0.67Down
Larval midgut271 114 of 4 0.92None
Larval tubule731 364 of 4 2.50Up
Larval hindgut786 294 of 4 2.66Up
Larval fat body82 54 of 4 0.30Down
Larval trachea386 134 of 4 1.31Up
Larval carcass1493 344 of 4 5.06Up
S2 cells (growing)790 234 of 4 2.68Up
Whole fly295 254 of 4

Looking for FBgn0082582. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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