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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0082831 through 18771 annotations produced 1 hits



SNFs Protein Partner (pps):

Annotation Number : CG6525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0082831
Gbrowse : chr3R:8239878-8246629 (+) // 100.0 //
Probeset : 1630626_at
Accessions : protein= NP_650193;, nucleotide= NM_141936;
Pathway : 0000790 // nuclear chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structura
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0082831.
TRiP has 2 RNAi stocks for FBgn0082831 available for purchase.
VDRC has 1 RNAi stocks for FBgn0082831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 54 of 4 2.00Up
Head43 44 of 4 0.90None
Eye15 14 of 4 0.33Down
Thoracicoabdominal ganglion69 34 of 4 1.40Up
Salivary gland51 61 of 4 1.07None
Crop34 24 of 4 0.70None
Midgut37 53 of 4 0.80None
Tubule13 10 of 4 0.30Down
Hindgut47 24 of 4 1.00None
Heart5 00 of 4 0.11Down
Fat body20 31 of 4 0.43Down
Ovary76 34 of 4 1.60Up
Testis51 64 of 4 1.10None
Male accessory glands53 63 of 4 1.10None
Virgin spermatheca4 10 of 4 0.08Down
Mated spermatheca3 10 of 4 0.07Down
Adult carcass39 62 of 4 0.80None
Larval CNS105 84 of 4 2.18Up
Larval Salivary gland69 54 of 4 1.44Up
Larval midgut25 62 of 4 0.53Down
Larval tubule58 44 of 4 1.20None
Larval hindgut41 24 of 4 0.85None
Larval fat body21 31 of 4 0.50Down
Larval trachea13 13 of 4 0.28Down
Larval carcass43 24 of 4 0.90None
S2 cells (growing)85 24 of 4 1.76Up
Whole fly48 54 of 4

Looking for FBgn0082831. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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