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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083068 through 18771 annotations produced 1 hits



():

Annotation Number : CR_tc_GH03576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083068
Gbrowse : chr3L:11089756-11091659 (+) // 100.0 //
Probeset : 1640954_at
Accessions : protein= , nucleotide= NR_002483;
Pathway : 0005829 // cytosol // inferred from direct assay
FlyMine data for FBgn0083068.
TRiP has 1 RNAi stocks for FBgn0083068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 44 of 4 0.90None
Head53 ± 34 of 4 0.50Down
Eye86 ± 54 of 4 0.83None
Thoracicoabdominal ganglion99 ± 54 of 4 1.00None
Salivary gland32 ± 44 of 4 0.31Down
Crop41 ± 24 of 4 0.40Down
Midgut20 ± 14 of 4 0.20Down
Tubule23 ± 04 of 4 0.20Down
Hindgut25 ± 14 of 4 0.20Down
Heart27 ± 24 of 4 0.27Down
Fat body17 ± 34 of 4 0.17Down
Ovary141 ± 24 of 4 1.40Up
Testis723 ± 144 of 4 7.00Up
Male accessory glands9 ± 31 of 4 0.10Down
Virgin spermatheca26 ± 24 of 4 0.26Down
Mated spermatheca30 ± 44 of 4 0.29Down
Adult carcass29 ± 24 of 4 0.30Down
Larval CNS77 ± 44 of 4 0.75None
Larval Salivary gland24 ± 24 of 4 0.23Down
Larval midgut29 ± 44 of 4 0.28Down
Larval tubule14 ± 23 of 4 0.10Down
Larval hindgut34 ± 14 of 4 0.33Down
Larval fat body156 ± 724 of 4 1.50None
Larval trachea35 ± 54 of 4 0.34Down
Larval carcass44 ± 104 of 4 0.43Down
S2 cells (growing)35 ± 34 of 4 0.34Down
Whole fly104 ± 114 of 4

Looking for FBgn0083068. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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