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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083124 through 18771 annotations produced 1 hits



():

Annotation Number : HDC05344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083124
Gbrowse : chr2R:4983409-4984437 (+) // 100.0 //
Probeset : 1630661_at
Accessions : protein= , nucleotide= NR_033156;
FlyMine data for FBgn0083124.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain341 ± 214 of 4 1.00None
Head190 ± 174 of 4 0.60Down
Eye76 ± 24 of 4 0.23Down
Thoracicoabdominal ganglion278 ± 244 of 4 0.80None
Salivary gland116 ± 124 of 4 0.35Down
Crop178 ± 124 of 4 0.50Down
Midgut214 ± 64 of 4 0.70None
Tubule132 ± 104 of 4 0.40Down
Hindgut131 ± 74 of 4 0.40Down
Heart119 ± 24 of 4 0.36Down
Fat body252 ± 204 of 4 0.77None
Ovary594 ± 294 of 4 1.80Up
Testis24 ± 24 of 4 0.10Down
Male accessory glands414 ± 204 of 4 1.30None
Virgin spermatheca161 ± 84 of 4 0.49Down
Mated spermatheca266 ± 154 of 4 0.81None
Adult carcass138 ± 164 of 4 0.40Down
Larval CNS405 ± 184 of 4 1.23None
Larval Salivary gland310 ± 204 of 4 0.94None
Larval midgut89 ± 114 of 4 0.27Down
Larval tubule45 ± 34 of 4 0.10Down
Larval hindgut139 ± 254 of 4 0.42Down
Larval fat body102 ± 64 of 4 0.30Down
Larval trachea453 ± 1134 of 4 1.38None
Larval carcass188 ± 334 of 4 0.57Down
S2 cells (growing)298 ± 64 of 4 0.91None
Whole fly329 ± 424 of 4

Looking for FBgn0083124. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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