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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083228 through 18771 annotations produced 1 hits



Frequenin 2 (Frq2):

Annotation Number : CG5907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083228
Gbrowse : chrX:18080189-18095646 (+) // 100.0 //
Probeset : 1641088_at
Accessions : protein= NP_525093; /// NP_996501; /// NP_996502;, nucleotide= NM_080354; /// NM_206778; /// NM_206779;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0083228.
Homophila reports that CG5907 is a close match (6e-24) to human gene GCAP;GUCA1A (NP_000400), a gene associated with Cone dystrophy-3, 602093 (3).
BioGrid reports that CG5907 interacts with CG7123 CG8479 .
TRiP has 1 RNAi stocks for FBgn0083228 available for purchase.
VDRC has 4 RNAi stocks for FBgn0083228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 2.50None
Head4 10 of 4 1.40None
Eye6 02 of 4 2.12Up
Thoracicoabdominal ganglion11 21 of 4 3.50Up
Salivary gland7 41 of 4 2.18None
Crop10 01 of 4 3.00Up
Midgut4 20 of 4 1.50None
Tubule2 00 of 4 0.80None
Hindgut5 20 of 4 1.70None
Heart3 10 of 4 1.10None
Fat body6 20 of 4 2.02None
Ovary4 00 of 4 1.20None
Testis2 00 of 4 0.60None
Male accessory glands7 20 of 4 2.40None
Virgin spermatheca7 10 of 4 2.24Up
Mated spermatheca7 22 of 4 2.38None
Adult carcass13 50 of 4 4.00None
Larval CNS4 21 of 4 1.26None
Larval Salivary gland4 10 of 4 1.40None
Larval midgut8 21 of 4 2.67None
Larval tubule5 20 of 4 1.60None
Larval hindgut12 13 of 4 3.73Up
Larval fat body3 20 of 4 1.20None
Larval trachea5 11 of 4 1.75None
Larval carcass3 10 of 4 1.18None
S2 cells (growing)3 00 of 4 1.08None
Whole fly3 10 of 4

Looking for FBgn0083228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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