FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0083940 through 18771 annotations produced 4 hits

(CG34104):

Annotation Number : CG12102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083940
Gbrowse : chrX:10040218-10041405 (+) // 100.0 //
Probeset : 1635113_at
Accessions : protein= NP_001036266; /// NP_001036267;, nucleotide= NM_001042801; /// NM_001042802;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0083940.
TRiP has 2 RNAi stocks for FBgn0083940 available for purchase.
VDRC has 5 RNAi stocks for FBgn0083940 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	3 of 4	0.50	Down
Head	19 ± 2	4 of 4	0.90	None
Eye	24 ± 2	4 of 4	1.16	None
Thoracicoabdominal ganglion	14 ± 1	4 of 4	0.70	None
Salivary gland	6 ± 2	0 of 4	0.32	Down
Crop	28 ± 3	4 of 4	1.40	None
Midgut	17 ± 1	3 of 4	0.80	None
Tubule	29 ± 4	4 of 4	1.40	None
Hindgut	24 ± 0	4 of 4	1.10	None
Heart	3 ± 1	1 of 4	0.18	Down
Fat body	11 ± 2	1 of 4	0.53	Down
Ovary	24 ± 1	4 of 4	1.20	None
Testis	11 ± 3	3 of 4	0.60	None
Male accessory glands	12 ± 4	1 of 4	0.60	None
Virgin spermatheca	12 ± 1	1 of 4	0.59	Down
Mated spermatheca	13 ± 0	4 of 4	0.62	Down
Adult carcass	14 ± 4	1 of 4	0.70	None
Larval CNS	25 ± 3	4 of 4	1.21	None
Larval Salivary gland	24 ± 2	4 of 4	1.16	None
Larval midgut	14 ± 2	1 of 4	0.70	None
Larval tubule	192 ± 7	4 of 4	9.20	Up
Larval hindgut	15 ± 3	4 of 4	0.74	None
Larval fat body	51 ± 5	4 of 4	2.40	Up
Larval trachea	11 ± 3	3 of 4	0.54	Down
Larval carcass	16 ± 2	4 of 4	0.78	None
S2 cells (growing)	1 ± 0	0 of 4	0.09	Down
Whole fly	21 ± 2	4 of 4

(CG34104):

Annotation Number : CG12094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083940
Gbrowse : chrX:9980565-10032744 (+) // 99.85 //
Probeset : 1636704_at
Accessions : protein= NP_001036266; /// NP_001036267;, nucleotide= NM_001042801; /// NM_001042802;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0083940.
TRiP has 2 RNAi stocks for FBgn0083940 available for purchase.
VDRC has 5 RNAi stocks for FBgn0083940 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	1.00	None
Head	2 ± 1	0 of 4	6.80	None
Eye	1 ± 0	0 of 4	3.20	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	7.70	None
Salivary gland	5 ± 4	0 of 4	15.20	None
Crop	0 ± 0	0 of 4	1.60	None
Midgut	0 ± 0	0 of 4	0.90	None
Tubule	1 ± 0	0 of 4	3.40	Up
Hindgut	0 ± 0	0 of 4	2.10	None
Heart	0 ± 0	0 of 4	1.13	None
Fat body	1 ± 1	0 of 4	2.73	None
Ovary	0 ± 0	0 of 4	0.80	None
Testis	0 ± 0	0 of 4	2.50	None
Male accessory glands	3 ± 1	0 of 4	7.90	None
Virgin spermatheca	0 ± 0	0 of 4	0.80	None
Mated spermatheca	0 ± 0	0 of 4	1.00	None
Adult carcass	2 ± 1	0 of 4	6.30	None
Larval CNS	0 ± 0	0 of 4	0.67	None
Larval Salivary gland	0 ± 0	0 of 4	1.80	None
Larval midgut	0 ± 0	0 of 4	1.40	None
Larval tubule	0 ± 0	0 of 4	1.60	None
Larval hindgut	0 ± 0	0 of 4	1.20	None
Larval fat body	0 ± 0	0 of 4	1.40	None
Larval trachea	1 ± 1	0 of 4	2.80	None
Larval carcass	1 ± 0	0 of 4	4.67	None
S2 cells (growing)	0 ± 0	0 of 4	2.00	None
Whole fly	0 ± 0	0 of 4

CG34104 /// Tequila ():

Annotation Number : Transposon.6
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 31945 /// 39048
Gbrowse : /// Tequila
Probeset : 1640167_s_at
Accessions : protein= NM_001042801; /// NM_001042802; /// NM_001169922; /// NM_140031; /// NM_142161; /// NM_168314; /// NM_168315; /// NM_168316;, nucleotide= FBgn0023479 /// FBgn0083940
Pathway : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for 31945 /// 39048.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	682 ± 7	4 of 4	4.20	Up
Head	407 ± 29	4 of 4	2.50	Up
Eye	406 ± 24	4 of 4	2.49	Up
Thoracicoabdominal ganglion	724 ± 19	4 of 4	4.40	Up
Salivary gland	286 ± 7	4 of 4	1.76	Up
Crop	284 ± 23	4 of 4	1.70	Up
Midgut	158 ± 13	4 of 4	1.00	None
Tubule	52 ± 3	4 of 4	0.30	Down
Hindgut	179 ± 4	4 of 4	1.10	None
Heart	359 ± 13	4 of 4	2.21	Up
Fat body	747 ± 146	4 of 4	4.58	Up
Ovary	36 ± 3	4 of 4	0.20	Down
Testis	56 ± 3	4 of 4	0.30	Down
Male accessory glands	186 ± 30	4 of 4	1.10	None
Virgin spermatheca	658 ± 40	4 of 4	4.04	Up
Mated spermatheca	826 ± 36	4 of 4	5.06	Up
Adult carcass	287 ± 3	4 of 4	1.80	Up
Larval CNS	271 ± 46	4 of 4	1.67	Up
Larval Salivary gland	77 ± 8	4 of 4	0.47	Down
Larval midgut	39 ± 5	4 of 4	0.24	Down
Larval tubule	110 ± 4	4 of 4	0.70	None
Larval hindgut	95 ± 9	4 of 4	0.59	Down
Larval fat body	1196 ± 99	4 of 4	7.30	Up
Larval trachea	86 ± 18	4 of 4	0.53	Down
Larval carcass	115 ± 42	4 of 4	0.71	None
S2 cells (growing)	819 ± 20	4 of 4	5.02	Up
Whole fly	163 ± 19	4 of 4

(CG34104):

Annotation Number : S.CX001098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083940
Gbrowse : chrX:9982221-10005780 (+) // 99.3 //
Probeset : 1637474_at
Accessions : protein= NP_001036266; /// NP_001036267;, nucleotide= NM_001042801; /// NM_001042802;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0083940.
TRiP has 2 RNAi stocks for FBgn0083940 available for purchase.
VDRC has 5 RNAi stocks for FBgn0083940 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	1.20	None
Head	7 ± 2	0 of 4	1.80	None
Eye	2 ± 0	0 of 4	0.56	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.70	None
Salivary gland	29 ± 4	0 of 4	7.41	Up
Crop	4 ± 1	0 of 4	1.20	None
Midgut	6 ± 1	0 of 4	1.70	None
Tubule	3 ± 0	0 of 4	0.80	None
Hindgut	5 ± 2	0 of 4	1.50	None
Heart	3 ± 1	0 of 4	0.98	None
Fat body	7 ± 4	0 of 4	1.78	None
Ovary	5 ± 1	0 of 4	1.30	None
Testis	2 ± 1	0 of 4	0.70	None
Male accessory glands	10 ± 4	0 of 4	2.60	None
Virgin spermatheca	4 ± 1	0 of 4	1.02	None
Mated spermatheca	4 ± 2	0 of 4	1.21	None
Adult carcass	2 ± 0	0 of 4	0.60	None
Larval CNS	6 ± 3	1 of 4	1.52	None
Larval Salivary gland	3 ± 1	0 of 4	0.86	None
Larval midgut	4 ± 1	0 of 4	1.03	None
Larval tubule	10 ± 1	1 of 4	2.60	Up
Larval hindgut	1 ± 0	0 of 4	0.49	None
Larval fat body	10 ± 2	0 of 4	2.50	None
Larval trachea	0 ± 0	0 of 4	0.15	None
Larval carcass	4 ± 1	0 of 4	1.03	None
S2 cells (growing)	5 ± 1	0 of 4	1.30	None
Whole fly	4 ± 1	0 of 4

Looking for FBgn0083940. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720