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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083946 through 18771 annotations produced 2 hits



(CG34110):

Annotation Number : CG13661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083946
Gbrowse : chr3R:20995329-20997840 (-) // 98.47 //
Probeset : 1640559_at
Accessions : protein= NP_001036757;, nucleotide= NM_001043292;
FlyMine data for FBgn0083946.
VDRC has 6 RNAi stocks for FBgn0083946 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.17Down
Crop2 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body9 ± 21 of 4 0.22Down
Ovary1 ± 00 of 4 0.00Down
Testis601 ± 114 of 414.10Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.07Down
Mated spermatheca3 ± 10 of 4 0.08Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS7 ± 12 of 4 0.17Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut2 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body80 ± 493 of 4 1.90None
Larval trachea2 ± 31 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly42 ± 54 of 4



(CG34110):

Annotation Number : CG13662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083946
Gbrowse : chr3R:21018899-21019376 (-) // 100.0 //
Probeset : 1634894_at
Accessions : protein= NP_001036757;, nucleotide= NM_001043292;
FlyMine data for FBgn0083946.
VDRC has 6 RNAi stocks for FBgn0083946 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.80None
Head3 ± 10 of 4 0.80None
Eye3 ± 11 of 4 0.78None
Thoracicoabdominal ganglion5 ± 10 of 4 1.40None
Salivary gland10 ± 30 of 4 2.57None
Crop4 ± 00 of 4 1.00None
Midgut1 ± 10 of 4 0.40None
Tubule5 ± 00 of 4 1.20None
Hindgut4 ± 20 of 4 1.10None
Heart3 ± 00 of 4 0.93None
Fat body3 ± 30 of 4 0.79None
Ovary4 ± 10 of 4 1.10None
Testis46 ± 34 of 411.10Up
Male accessory glands5 ± 20 of 4 1.20None
Virgin spermatheca2 ± 00 of 4 0.51None
Mated spermatheca3 ± 00 of 4 0.78None
Adult carcass8 ± 20 of 4 2.10None
Larval CNS4 ± 10 of 4 1.17None
Larval Salivary gland5 ± 10 of 4 1.22None
Larval midgut2 ± 10 of 4 0.52None
Larval tubule1 ± 10 of 4 0.40None
Larval hindgut4 ± 20 of 4 1.05None
Larval fat body13 ± 62 of 4 3.20None
Larval trachea4 ± 30 of 4 1.01None
Larval carcass9 ± 00 of 4 2.32Up
S2 cells (growing)5 ± 00 of 4 1.21None
Whole fly4 ± 10 of 4

Looking for FBgn0083946. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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