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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083951 through 18771 annotations produced 1 hits



(CG34115):

Annotation Number : S.C2R002210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083951
Gbrowse : chr2R:16863098-16864361 (+) // 100.0 //
Probeset : 1631169_at
Accessions : protein= NP_001036564;, nucleotide= NM_001043099;
FlyMine data for FBgn0083951.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head5 ± 00 of 4 0.30Down
Eye7 ± 20 of 4 0.33Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland11 ± 41 of 4 0.52None
Crop24 ± 24 of 4 1.10None
Midgut22 ± 04 of 4 1.00None
Tubule3 ± 00 of 4 0.10Down
Hindgut94 ± 54 of 4 4.30Up
Heart2 ± 10 of 4 0.12Down
Fat body8 ± 50 of 4 0.38Down
Ovary3 ± 11 of 4 0.20Down
Testis5 ± 10 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.16Down
Mated spermatheca3 ± 00 of 4 0.14Down
Adult carcass10 ± 20 of 4 0.50None
Larval CNS2 ± 00 of 4 0.09Down
Larval Salivary gland2 ± 00 of 4 0.13Down
Larval midgut5 ± 10 of 4 0.25Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut100 ± 214 of 4 4.64Up
Larval fat body5 ± 30 of 4 0.20Down
Larval trachea108 ± 224 of 4 5.01Up
Larval carcass14 ± 02 of 4 0.68None
S2 cells (growing)21 ± 24 of 4 1.00None
Whole fly21 ± 34 of 4

Looking for FBgn0083951. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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