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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083952 through 18771 annotations produced 2 hits



(CG34116):

Annotation Number : S.C3L002478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083952
Gbrowse : chr3L:19798467-19799103 (-) // 100.0 //
Probeset : 1628330_at
Accessions : protein= NP_001036616;, nucleotide= NM_001043151;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0083952.
VDRC has 2 RNAi stocks for FBgn0083952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 04 of 4 1.10None
Head19 ± 14 of 4 0.80None
Eye20 ± 34 of 4 0.85None
Thoracicoabdominal ganglion26 ± 14 of 4 1.10None
Salivary gland34 ± 44 of 4 1.39None
Crop23 ± 14 of 4 1.00None
Midgut17 ± 21 of 4 0.70None
Tubule25 ± 23 of 4 1.00None
Hindgut21 ± 14 of 4 0.90None
Heart19 ± 24 of 4 0.80None
Fat body16 ± 63 of 4 0.68None
Ovary71 ± 14 of 4 2.90Up
Testis11 ± 04 of 4 0.50Down
Male accessory glands28 ± 34 of 4 1.10None
Virgin spermatheca30 ± 14 of 4 1.22Up
Mated spermatheca32 ± 14 of 4 1.31Up
Adult carcass15 ± 22 of 4 0.60Down
Larval CNS43 ± 44 of 4 1.78Up
Larval Salivary gland22 ± 04 of 4 0.91None
Larval midgut9 ± 00 of 4 0.38Down
Larval tubule20 ± 14 of 4 0.80None
Larval hindgut12 ± 14 of 4 0.49Down
Larval fat body23 ± 43 of 4 0.90None
Larval trachea30 ± 34 of 4 1.23None
Larval carcass13 ± 12 of 4 0.55Down
S2 cells (growing)31 ± 24 of 4 1.27None
Whole fly24 ± 14 of 4



/// (CG14103 /// CG34116):

Annotation Number : CG14103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036908
Gbrowse : chr3L:19797019-19798169 (-) // 100.0 //
Probeset : 1637160_at
Accessions : protein= NP_649149;, nucleotide= NM_140892;
FlyMine data for FBgn0036908.
BDGP gene expression has embryonic in situ data for CG14103: 4 pix of staining in 1 body parts.
BioGrid reports that CG14103 interacts with CG6707 .
TRiP has 1 RNAi stocks for FBgn0036908 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain342 ± 44 of 4 1.20Up
Head292 ± 114 of 4 1.10None
Eye437 ± 94 of 4 1.59Up
Thoracicoabdominal ganglion353 ± 204 of 4 1.30Up
Salivary gland339 ± 94 of 4 1.23Up
Crop268 ± 114 of 4 1.00None
Midgut359 ± 64 of 4 1.30Up
Tubule203 ± 134 of 4 0.70Down
Hindgut258 ± 64 of 4 0.90None
Heart236 ± 64 of 4 0.86Down
Fat body213 ± 114 of 4 0.77Down
Ovary408 ± 74 of 4 1.50Up
Testis116 ± 14 of 4 0.40Down
Male accessory glands769 ± 134 of 4 2.80Up
Virgin spermatheca322 ± 54 of 4 1.17Up
Mated spermatheca404 ± 154 of 4 1.47Up
Adult carcass229 ± 134 of 4 0.80Down
Larval CNS520 ± 134 of 4 1.89Up
Larval Salivary gland477 ± 144 of 4 1.73Up
Larval midgut272 ± 174 of 4 0.99None
Larval tubule365 ± 74 of 4 1.30Up
Larval hindgut351 ± 124 of 4 1.28Up
Larval fat body301 ± 184 of 4 1.10None
Larval trachea499 ± 64 of 4 1.81Up
Larval carcass367 ± 114 of 4 1.33Up
S2 cells (growing)589 ± 74 of 4 2.14Up
Whole fly275 ± 94 of 4

Looking for FBgn0083952. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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