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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083953 through 18771 annotations produced 1 hits



(CG34117):

Annotation Number : S.C3R000708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083953
Gbrowse : chr3R:5225355-5225662 (-) // 100.0 //
Probeset : 1631603_at
Accessions : protein= NP_001036690;, nucleotide= NM_001043225;
FlyMine data for FBgn0083953.
TRiP has 1 RNAi stocks for FBgn0083953 available for purchase.
VDRC has 1 RNAi stocks for FBgn0083953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 ± 94 of 4 1.00None
Head246 ± 164 of 4 1.00None
Eye330 ± 44 of 4 1.29Up
Thoracicoabdominal ganglion283 ± 144 of 4 1.10None
Salivary gland252 ± 74 of 4 0.98None
Crop132 ± 64 of 4 0.50Down
Midgut178 ± 44 of 4 0.70Down
Tubule117 ± 24 of 4 0.50Down
Hindgut241 ± 134 of 4 0.90None
Heart243 ± 14 of 4 0.95None
Fat body170 ± 144 of 4 0.66Down
Ovary242 ± 44 of 4 0.90None
Testis217 ± 64 of 4 0.80None
Male accessory glands199 ± 54 of 4 0.80Down
Virgin spermatheca137 ± 94 of 4 0.53Down
Mated spermatheca155 ± 124 of 4 0.61Down
Adult carcass381 ± 134 of 4 1.50Up
Larval CNS212 ± 244 of 4 0.83None
Larval Salivary gland268 ± 14 of 4 1.05None
Larval midgut126 ± 84 of 4 0.49Down
Larval tubule99 ± 04 of 4 0.40Down
Larval hindgut145 ± 84 of 4 0.57Down
Larval fat body122 ± 84 of 4 0.50Down
Larval trachea210 ± 114 of 4 0.82Down
Larval carcass159 ± 54 of 4 0.62Down
S2 cells (growing)175 ± 14 of 4 0.68Down
Whole fly256 ± 144 of 4

Looking for FBgn0083953. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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