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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083971 through 18771 annotations produced 1 hits



(CG34135):

Annotation Number : HDC12541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083971
Gbrowse : chr3R:4575962-4576637 (-) // 100.0 //
Probeset : 1640994_at
Accessions : protein= NP_001036688; /// NP_001036689;, nucleotide= NM_001043223; /// NM_001043224;
FlyMine data for FBgn0083971.
VDRC has 1 RNAi stocks for FBgn0083971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 6.90Up
Head12 ± 23 of 4 2.50Up
Eye5 ± 10 of 4 1.12None
Thoracicoabdominal ganglion44 ± 44 of 4 9.40Up
Salivary gland11 ± 40 of 4 2.38None
Crop4 ± 10 of 4 1.00None
Midgut3 ± 10 of 4 0.70None
Tubule5 ± 00 of 4 1.20Up
Hindgut5 ± 10 of 4 1.20None
Heart4 ± 00 of 4 0.92None
Fat body9 ± 31 of 4 1.99None
Ovary2 ± 10 of 4 0.50None
Testis6 ± 20 of 4 1.30None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca6 ± 11 of 4 1.26None
Mated spermatheca8 ± 03 of 4 1.71None
Adult carcass13 ± 11 of 4 2.90Up
Larval CNS15 ± 24 of 4 3.34Up
Larval Salivary gland9 ± 20 of 4 2.03None
Larval midgut5 ± 00 of 4 1.11None
Larval tubule8 ± 10 of 4 1.70None
Larval hindgut5 ± 00 of 4 1.19None
Larval fat body7 ± 30 of 4 1.50None
Larval trachea1 ± 00 of 4 0.29None
Larval carcass10 ± 10 of 4 2.22Up
S2 cells (growing)4 ± 00 of 4 0.94None
Whole fly4 ± 10 of 4

Looking for FBgn0083971. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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