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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083976 through 18771 annotations produced 1 hits



/// MAP kinase-specific phosphatase (CG34140 /// Mkp):

Annotation Number : CG7042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083976 /// FBgn0083992
Gbrowse : chr3L:182521-184422 (-) // 100.0 //
Probeset : 1627640_at
Accessions : protein= NP_001036572; /// NP_001036573; /// NP_001036574;, nucleotide= NM_001043107; /// NM_001043108; /// NM_001043109;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // infe
FlyMine data for FBgn0083976 /// FBgn0083992.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain334 ± 84 of 4 1.80Up
Head238 ± 84 of 4 1.30Up
Eye261 ± 144 of 4 1.41Up
Thoracicoabdominal ganglion282 ± 34 of 4 1.50Up
Salivary gland299 ± 144 of 4 1.62Up
Crop278 ± 134 of 4 1.50Up
Midgut164 ± 54 of 4 0.90None
Tubule282 ± 64 of 4 1.50Up
Hindgut257 ± 44 of 4 1.40Up
Heart153 ± 44 of 4 0.83None
Fat body120 ± 64 of 4 0.65Down
Ovary245 ± 24 of 4 1.30Up
Testis101 ± 24 of 4 0.60Down
Male accessory glands180 ± 44 of 4 1.00None
Virgin spermatheca95 ± 34 of 4 0.51Down
Mated spermatheca91 ± 24 of 4 0.50Down
Adult carcass189 ± 44 of 4 1.00None
Larval CNS232 ± 184 of 4 1.26Up
Larval Salivary gland209 ± 74 of 4 1.13None
Larval midgut142 ± 64 of 4 0.77Down
Larval tubule206 ± 74 of 4 1.10None
Larval hindgut234 ± 64 of 4 1.27Up
Larval fat body174 ± 154 of 4 0.90None
Larval trachea252 ± 84 of 4 1.37Up
Larval carcass252 ± 134 of 4 1.37Up
S2 cells (growing)186 ± 44 of 4 1.01None
Whole fly185 ± 114 of 4

Looking for FBgn0083976. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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