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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0083978 through 18771 annotations produced 1 hits



(CG17672):

Annotation Number : CG11271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083978
Gbrowse : chr3L:13016469-13029537 (+) // 100.0 //
Probeset : 1637708_a_at
Accessions : protein= NP_001036603;, nucleotide= NM_001043138;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation
FlyMine data for FBgn0083978.
BioGrid reports that CG11271 interacts with CG11648 CG12256 CG13811 CG15781 CG17667 CG18616 CG18854 CG2851 CG2865 CG30497 CG32705 CG33141 CG3613 CG4832 CG5099 CG5546 CG6172 CG7173 CG7285 CG7570 CG8292 CG9610 .
VDRC has 1 RNAi stocks for FBgn0083978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head6 ± 10 of 4 0.50None
Eye3 ± 10 of 4 0.28Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.60None
Salivary gland15 ± 20 of 4 1.17None
Crop5 ± 00 of 4 0.40Down
Midgut13 ± 20 of 4 1.00None
Tubule7 ± 10 of 4 0.50Down
Hindgut12 ± 10 of 4 0.90None
Heart4 ± 00 of 4 0.31Down
Fat body11 ± 70 of 4 0.81None
Ovary11 ± 00 of 4 0.90None
Testis16 ± 11 of 4 1.20None
Male accessory glands19 ± 30 of 4 1.40None
Virgin spermatheca3 ± 00 of 4 0.27Down
Mated spermatheca5 ± 20 of 4 0.42Down
Adult carcass12 ± 30 of 4 1.00None
Larval CNS20 ± 53 of 4 1.49None
Larval Salivary gland19 ± 30 of 4 1.48None
Larval midgut17 ± 61 of 4 1.32None
Larval tubule5 ± 30 of 4 0.40None
Larval hindgut18 ± 12 of 4 1.40None
Larval fat body19 ± 41 of 4 1.40None
Larval trachea34 ± 54 of 4 2.54Up
Larval carcass34 ± 34 of 4 2.53Up
S2 cells (growing)9 ± 20 of 4 0.74None
Whole fly13 ± 20 of 4

Looking for FBgn0083978. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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