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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085194 through 18771 annotations produced 1 hits



(CG34165):

Annotation Number : HDC02560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085194
Gbrowse : chr2L:14713828-14714220 (+) // 100.0 //
Probeset : 1640675_at
Accessions : protein= NP_001097161;, nucleotide= NM_001103691;
FlyMine data for FBgn0085194.
VDRC has 1 RNAi stocks for FBgn0085194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head170 ± 114 of 413.90Up
Eye2 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.40Down
Salivary gland8 ± 30 of 4 0.67None
Crop150 ± 74 of 412.20Up
Midgut4 ± 10 of 4 0.30Down
Tubule3 ± 00 of 4 0.30Down
Hindgut6 ± 00 of 4 0.50Down
Heart4 ± 10 of 4 0.40Down
Fat body2 ± 20 of 4 0.20Down
Ovary2 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 10 of 4 0.26Down
Mated spermatheca2 ± 00 of 4 0.16Down
Adult carcass9 ± 11 of 4 0.80None
Larval CNS10 ± 24 of 4 0.85None
Larval Salivary gland3 ± 10 of 4 0.30Down
Larval midgut11 ± 11 of 4 0.94None
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut55 ± 74 of 4 4.49Up
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea69 ± 174 of 4 5.66Up
Larval carcass563 ± 384 of 445.80Up
S2 cells (growing)4 ± 11 of 4 0.35Down
Whole fly12 ± 04 of 4

Looking for FBgn0085194. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime