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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085213 through 18771 annotations produced 1 hits



(CG34184):

Annotation Number : Stencil:2R:9429570:9430384:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085213
Gbrowse : chr2R:10253349-10254163 (+) // 100.0 //
Probeset : 1634581_at
Accessions : protein= NP_001097310;, nucleotide= NM_001103840;
FlyMine data for FBgn0085213.
VDRC has 1 RNAi stocks for FBgn0085213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head6 ± 21 of 4 2.10None
Eye6 ± 00 of 4 2.01None
Thoracicoabdominal ganglion3 ± 10 of 4 1.20None
Salivary gland6 ± 20 of 4 2.18None
Crop2 ± 10 of 4 0.90None
Midgut7 ± 10 of 4 2.30None
Tubule3 ± 00 of 4 1.20None
Hindgut3 ± 11 of 4 1.20None
Heart2 ± 00 of 4 0.68None
Fat body6 ± 20 of 4 2.28Up
Ovary1 ± 00 of 4 0.50None
Testis3 ± 00 of 4 1.20None
Male accessory glands5 ± 10 of 4 1.90None
Virgin spermatheca5 ± 11 of 4 1.67None
Mated spermatheca3 ± 00 of 4 1.21None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS1 ± 00 of 4 0.56None
Larval Salivary gland5 ± 20 of 4 1.78None
Larval midgut3 ± 10 of 4 1.12None
Larval tubule5 ± 00 of 4 1.90None
Larval hindgut2 ± 10 of 4 0.83None
Larval fat body7 ± 10 of 4 2.50Up
Larval trachea6 ± 21 of 4 2.07None
Larval carcass3 ± 10 of 4 1.22None
S2 cells (growing)3 ± 00 of 4 1.15None
Whole fly3 ± 10 of 4

Looking for FBgn0085213. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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